View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1482_low_8 (Length: 411)
Name: NF1482_low_8
Description: NF1482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1482_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 8 - 390
Target Start/End: Complemental strand, 30655343 - 30654955
Alignment:
| Q |
8 |
ccaataaaataacaataataccaattgatgtacgattatgcctccctttcctcaacaccctcaacctatatgatcaacacccataactcaacaaaaaatc |
107 |
Q |
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| T |
30655343 |
ccaacaaaataacaataacaccaattgatgtacgattatgcctccctttcctcaacaccctcaacctatatgatcaacacccataactcagcaaaaactc |
30655244 |
T |
|
| Q |
108 |
cacctttaaaaccccttaagagctaataccacccaaaagatgcaaccaccaca------cccaagcaaacacctataacacttcaccaccgctctttcaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30655243 |
cacctttaaaaccccttaagagctaataccacccaaaagatgcaaccaccactaccacgcccaagcaaacacctataacacttcaccaccactctttcaa |
30655144 |
T |
|
| Q |
202 |
gccaccgtaacaaccccaaaacaccatacaaaacaccacatcaacacccataggtctcccaagaccatccaccaaaacagatccnnnnnnncgtatatca |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| | |
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| T |
30655143 |
gccaccgtaacaaccccaaaacaccatacaaaacaccacatcaacacccataggtctcccaagaccatccaccaaaaaagatccaaaaaaacgtatatta |
30655044 |
T |
|
| Q |
302 |
gcacctctattcctgttcccatcccttttacaaaacactaccaccaacaaaagcccctgagcattgtcggagacgtgaaaccacggcgg |
390 |
Q |
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| T |
30655043 |
acacctctgttcctcttcccatcccttttacaaaacactaccaccaacaacagcccctgagcattgtcggagacgtgaaaccacggcgg |
30654955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 161 - 390
Target Start/End: Complemental strand, 38929003 - 38928775
Alignment:
| Q |
161 |
cccaagcaaacacctataacacttcaccaccgctctttcaagccaccgtaacaaccccaaaacaccatacaaaacaccacatcaacacccataggtctcc |
260 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||| |||||| |
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| T |
38929003 |
cccaagcaaacacctataacacttcaccatcgctctttcaagccaccataacaaccccaaaacaccgtacaaaacctcacatcaacacccataagtctcc |
38928904 |
T |
|
| Q |
261 |
caagaccatccaccaaaacagatccnnnnnnncgtatatcagcacctctattcctgttcccatcccttttacaaaacactaccaccaacaaaagcccctg |
360 |
Q |
| |
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||||||| |||||||||||| |||| || ||| || ||||| | ||||| ||||||||| ||||||||||||||||| | | |||||||| | | |
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| T |
38928903 |
caagaccctccaccaaaacaaatcc-aaaaaacgaatagcaacacctatgttcctcttcccatcctttttacaaaacactacccctagcaaaagccacag |
38928805 |
T |
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| Q |
361 |
agcattgtcggagacgtgaaaccacggcgg |
390 |
Q |
| |
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| |||||||||| ||| |||||||||||| |
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| T |
38928804 |
accattgtcggacacgctaaaccacggcgg |
38928775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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