View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14830_high_3 (Length: 318)

Name: NF14830_high_3
Description: NF14830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14830_high_3
NF14830_high_3
[»] chr7 (1 HSPs)
chr7 (10-318)||(45636217-45636525)


Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 10 - 318
Target Start/End: Complemental strand, 45636525 - 45636217
Alignment:
Q  10 aaaatgcagagaaatcttagaggatccgctnnnnnnngagttttttcatttgcaaaacgacctaacaaaattcgaaagaactaattcttctaaagtcctt 109  Q
    |||||||||||||||| |||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45636525 aaaatgcagagaaatcgtagaggatccgctaaaaaaagagttttttcatttgcaaaacgacctaacaaaattcgaaagaactaattcttctaaagtcctt 45636426  T
Q  110 ttcatgttgagaatctacttatttgaaaagatgatcaaatcatttgatttgttggtcacaagttggcaagtgttaaggcaagagaaagagataaaggatt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  45636425 ttcatgttgagaatctacttatttgaaaagatgatcaaatcatttgatttgttggtcacaagttggcaagtgttaaggcaagagaaagagataaaggttt 45636326  T
Q  210 gtttaaagggaaacttgagagaatggacagaaaaataactcaattatgtgaaaaattgtttgagttgagtcaaaacatagataatgatacaattgatttt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45636325 gtttaaagggaaacttgagagaatggacagaaaaataactcaattatgtgaaaaattgtttgagttgagtcaaaacatagataatgatacaattgatttt 45636226  T
Q  310 cttaaaaac 318  Q
    |||||||||    
T  45636225 cttaaaaac 45636217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University