View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14830_low_10 (Length: 341)
Name: NF14830_low_10
Description: NF14830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14830_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 18234901 - 18234571
Alignment:
| Q |
1 |
gaatggactacaatataaccctacaaaattttaacgtaaggaaaggcaaacaaagcaatggaaaacaaaaattcagtgagatatacaatagcaatttaac |
100 |
Q |
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| T |
18234901 |
gaatggactacaatataaccctacaaaattttaacgtaaggaaaggcaaacaaagcaatggaaaacaagaattcagtgagatatacaatagcaatttaac |
18234802 |
T |
|
| Q |
101 |
gtaatagtacaaaacagaaattcagaaccacaaatattcaatgatccaacaaatatctttaatcagggaaaccacagtgaaga----------aagtcag |
190 |
Q |
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| T |
18234801 |
gtaatagtacaaaacagaaattcagaaccacaaatattcgatgatccaacaaatctctttaatcaggggaaccacagtgaagaaaggtgaaggaagttag |
18234702 |
T |
|
| Q |
191 |
agaaatcatcacatactctcttaagtgtgatttccttgattaaaaatattcaatggatcaaatgctgccacnnnnnnnnctgggatgttgaaacaagatg |
290 |
Q |
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| T |
18234701 |
agaa---atctcatactcccttaagtgtgatttccttgattaaaaaaattcaatggatcaaatgctgccacttttttttctgggatgttgaaacaagatg |
18234605 |
T |
|
| Q |
291 |
aattctttgtgatagcatgtagacatgtatttat |
324 |
Q |
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| T |
18234604 |
aattctttgtgatagctcgtagacatgtatttat |
18234571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 38018240 - 38018293
Alignment:
| Q |
200 |
cacatactctcttaagtgtgatttccttgattaaaaatattcaatggatcaaat |
253 |
Q |
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| T |
38018240 |
cacaaactctcttgactgtgatttccttgattaaaagaattcaatggatcaaat |
38018293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 38022345 - 38022390
Alignment:
| Q |
141 |
atgatccaacaaatatctttaatcagggaaaccacagtgaagaaag |
186 |
Q |
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| T |
38022345 |
atgatccaacaaatttctttaatcaaggaaaacacagtggagaaag |
38022390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 38025308 - 38025364
Alignment:
| Q |
197 |
catcacatactctcttaagtgtgatttccttgattaaaaatattcaatggatcaaat |
253 |
Q |
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| T |
38025308 |
catctcatactctcttaaccatgatttccatgattaagaaaattcaatggatcaaat |
38025364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 18384989 - 18385026
Alignment:
| Q |
214 |
agtgtgatttccttgattaaaaatattcaatggatcaa |
251 |
Q |
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| T |
18384989 |
agtgtaatttccttgattaaaaaaattcaatggatcaa |
18385026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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