View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14830_low_2 (Length: 576)
Name: NF14830_low_2
Description: NF14830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14830_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 248 - 561
Target Start/End: Original strand, 1656683 - 1656998
Alignment:
| Q |
248 |
ctaaattttttaaaaaatcatataattcagtgtaattatttggtattgattgag--tttccttagacaactgggagctctggattaaatgtaaaaaggct |
345 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1656683 |
ctaaattttttaaaaaatcacataattcagtgtaattatttggtattgattgagagtttccttagacaactgggagctctggattaaatgtaaaaaggct |
1656782 |
T |
|
| Q |
346 |
tgatcaagagacagatactaagattggagacttaaagcaatcaggttcaaaggtctcaacagaagttgttgacatgctactcaagtatgttacaaatatt |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1656783 |
tgatcaagagacagatactaagattggagacttaaagcaatcaggttcaaaggtctcaacagaagttgttgacatgctactcaagtatgttacaaatatt |
1656882 |
T |
|
| Q |
446 |
aaaacataatggcctaaggttagtatttaattcctagctctttcaaattattttgtaattgggcataaatgaaaccttgtttcttgttttgatcagaaaa |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1656883 |
aaaacataatggcctaaggttagtatttaattcctagctctttcaaattattttgtaattgggcataaatgaaaccttgtttcttgttttgatcagaaaa |
1656982 |
T |
|
| Q |
546 |
cttaaaggtgggaact |
561 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
1656983 |
cttaaaggtgggaact |
1656998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 7 - 172
Target Start/End: Original strand, 1656442 - 1656607
Alignment:
| Q |
7 |
gaagaatatcaaaagtcactaacagaggtatatatgcacacacatttatacatggattttatttgcatgtttagtaaatgtttttatacatacattttgt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1656442 |
gaagaatatcaaaagtcactaacagaggtatatatgcacacacatttatacatggattttatttgcatgtttagtaaatgtttttatacatacattttgt |
1656541 |
T |
|
| Q |
107 |
tgttacaaattctaaaatattttcataaatgtgtatatatggtgagatttgattgaatgcatatgg |
172 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1656542 |
tgttacaaatcctaaaatattttcataaatgtgtatatatggtgagatttgattgaatgcatatgg |
1656607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 39138451 - 39138489
Alignment:
| Q |
248 |
ctaaattttttaaaaaatcatataattcagtgtaattat |
286 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
39138451 |
ctaaattttttagaaaatcacataattcagtgtaattat |
39138489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 286
Target Start/End: Original strand, 39758278 - 39758317
Alignment:
| Q |
247 |
gctaaattttttaaaaaatcatataattcagtgtaattat |
286 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
39758278 |
gctaaattttttagaaaatcacataattcagtgtaattat |
39758317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 32426922 - 32426880
Alignment:
| Q |
247 |
gctaaattttttaaaaaatcatataattcagtgtaattatttg |
289 |
Q |
| |
|
||||||||||||| ||||||| |||||||| |||||||||||| |
|
|
| T |
32426922 |
gctaaattttttagaaaatcacataattcattgtaattatttg |
32426880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 289
Target Start/End: Complemental strand, 16069295 - 16069265
Alignment:
| Q |
259 |
aaaaaatcatataattcagtgtaattatttg |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
16069295 |
aaaaaatcatataattcagtgtaattatttg |
16069265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 286
Target Start/End: Complemental strand, 48148083 - 48148051
Alignment:
| Q |
254 |
tttttaaaaaatcatataattcagtgtaattat |
286 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
48148083 |
ttttaaaaaaatcatataattcagtgtaattat |
48148051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University