View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14830_low_3 (Length: 529)

Name: NF14830_low_3
Description: NF14830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14830_low_3
NF14830_low_3
[»] chr5 (5 HSPs)
chr5 (8-509)||(6159993-6160494)
chr5 (139-373)||(36845682-36845942)
chr5 (15-138)||(36845967-36846090)
chr5 (312-371)||(36845586-36845645)
chr5 (388-430)||(36856049-36856091)
[»] chr6 (9 HSPs)
chr6 (139-373)||(6681779-6682025)
chr6 (297-441)||(6682044-6682198)
chr6 (269-369)||(6771311-6771414)
chr6 (373-450)||(6671058-6671136)
chr6 (394-443)||(6771208-6771257)
chr6 (394-434)||(6764986-6765026)
chr6 (15-136)||(6681640-6681752)
chr6 (26-84)||(6771430-6771488)
chr6 (206-338)||(6670897-6671037)
[»] scaffold0299 (4 HSPs)
scaffold0299 (26-139)||(17090-17203)
scaffold0299 (202-347)||(17265-17413)
scaffold0299 (202-347)||(17489-17637)
scaffold0299 (394-443)||(17714-17763)
[»] chr3 (5 HSPs)
chr3 (373-429)||(2942359-2942415)
chr3 (402-451)||(46524918-46524967)
chr3 (199-262)||(49884271-49884336)
chr3 (297-375)||(46524722-46524802)
chr3 (17-125)||(46524362-46524470)
[»] chr1 (1 HSPs)
chr1 (377-426)||(18137541-18137590)


Alignment Details
Target: chr5 (Bit Score: 462; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 8 - 509
Target Start/End: Complemental strand, 6160494 - 6159993
Alignment:
Q  8 agtgagatgaagaaccatgtagaacagaaatcagtgcattctgaatcttgctgtagagctgaagttttggaaagcgatggagcaatcgttggccaatgaa 107  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6160494 agtgatatgaagaaccatgtagaacagaaatcagtgcattctgaatcttgctgtagagctgaagttttggaaagcgatggagcaatcgttggccaatgaa 6160395  T
Q  108 tctttgtgaatatatagagtgcacaataagtgatcacttgccaaattttattaactttgatgaagctattaaatttcgttaaagctaagtgtcaacataa 207  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6160394 tctttgtgaatatatagagtgcacaataagtgattacctgccaaattttattaactttgatgaagctattaaatttcgttaaagctaagtgtcaacataa 6160295  T
Q  208 gtgttgtgcttttcatctttccttttgtgtatgtaaatttgattatgtatatacataggtcaggaatagccttattattcattctcttaaaataagagat 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6160294 gtgttgtgcttttcatctttccttttgtgtatgtaaatttgattatgtatatacataggttaggaatagccttattattcattctcttaaaataagagat 6160195  T
Q  308 tcaa--ttgtgttgttgtgaatgtatattcaatggttgagagctaagctcaaactactcaattcaagttttcattgcttctgctgttctacatcaattta 405  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6160194 tcaattttgtgttgttgtgaatgtatattcaatggttgagagctaagctcaaactacacaattcaagttttcattgcttctgctgttctacatcaattta 6160095  T
Q  406 aatgtttgaagtgccacattgatggctttacattcatgaacaattaattatgtcaaaaacacagaggagctcaatgataaaaattatatttgttgccata 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  6160094 aatgtttgaagtgccacattgatggctttacattcatgaacaattaattatgtcaaaaacac--aggagctcaatgataaaaattatatttgttgccata 6159997  T
Q  506 gttt 509  Q
    ||||    
T  6159996 gttt 6159993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 139 - 373
Target Start/End: Complemental strand, 36845942 - 36845682
Alignment:
Q  139 gatcacttgccaaattttattaactttgatgaagc-tattaaatttcgttaaagctaagtgtcaaca-----------taagtgttgtgcttttcatctt 226  Q
    ||||||||| |||||||||||| |||||||||||| | ||||||||| || ||||||||||| ||||           | ||||||||| ||||||||||    
T  36845942 gatcacttgacaaattttattagctttgatgaagcattttaaatttcattgaagctaagtgtaaacagtttaacgtaattagtgttgtgattttcatctt 36845843  T
Q  227 tccttttgtgtatgtaaatttgattat---gtatatacataggtcagg-------aatagccttattattcatt-ctcttaaaataagagattcaatt-- 313  Q
    ||||||||||||| |||||||||||||   |||||||||||||| |||       ||||||||||||||||||| |||||||||||||||||||||||      
T  36845842 tccttttgtgtatataaatttgattattatgtatatacataggttaggggttaggaatagccttattattcatttctcttaaaataagagattcaatttt 36845743  T
Q  314 gtgttgttgtgaatgtatattcaatggttgagag-ctaagctcaaactactcaattcaagt 373  Q
    |||||||||||||| ||||||||||||||||||| |||||||| ||||| |||||| ||||    
T  36845742 gtgttgttgtgaatatatattcaatggttgagagcctaagctccaactattcaatttaagt 36845682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 36846090 - 36845967
Alignment:
Q  15 tgaagaaccatgtagaacagaaatcagtgcattctgaatcttgctgtagagctgaagttttggaaagcgatggagcaatcgttggccaatgaatctttgt 114  Q
    ||||||| |||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||| || ||| ||||||||||||||||||    
T  36846090 tgaagaagcatgtagaacagaaatcaatgcattctgaatcttgacgtagagctgaagttttggaaagcgatggaacagtcgctggccaatgaatctttgt 36845991  T
Q  115 gaatatatagagtgcacaataagt 138  Q
    ||||||||||||| ||||| ||||    
T  36845990 gaatatatagagtacacaacaagt 36845967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 371
Target Start/End: Complemental strand, 36845645 - 36845586
Alignment:
Q  312 ttgtgttgttgtgaatgtatattcaatggttgagagctaagctcaaactactcaattcaa 371  Q
    |||| ||||||| |||||||||| |||||||||||||||||||| ||||| |||||||||    
T  36845645 ttgtattgttgtaaatgtatattaaatggttgagagctaagctccaactattcaattcaa 36845586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 388 - 430
Target Start/End: Complemental strand, 36856091 - 36856049
Alignment:
Q  388 ctgttctacatcaatttaaatgtttgaagtgccacattgatgg 430  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  36856091 ctgttctacatcaatttaaatttttgaagtgccacattgatgg 36856049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 5e-54; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 139 - 373
Target Start/End: Original strand, 6681779 - 6682025
Alignment:
Q  139 gatcacttgccaaattttattaactttgatgaagc-tattaaatttcgttaaagctaagtgtcaaca--------taagtgttgtgcttttcatctttcc 229  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||| |||| ||| || ||||        ||||||||||| |||| ||||||||    
T  6681779 gatcacttgccaaattttattatctttgatgaagcatattaaatttcgttgaagc-aagcgtaaacagctcgacataagtgttgtgattttaatctttcc 6681877  T
Q  230 ttttgtgtatgtaaatttgattatgtat-atacataggtcaggaatagccttattattcattctcttaaaataagagattcaa--ttgtgttgttgtgaa 326  Q
    |||||||||| ||||||||||||||||  |||||||||| |||||||| ||||||||| ||||||||||||||||||||||||  |||||||||||| ||    
T  6681878 ttttgtgtatataaatttgattatgtaacatacataggttaggaataggcttattattgattctcttaaaataagagattcaattttgtgttgttgtaaa 6681977  T
Q  327 tgtatattcaatggttgaga-gctaagctcaaactactcaattcaagt 373  Q
     ||||||||||||||||||| || |||||| ||| | |||||||||||    
T  6681978 agtatattcaatggttgagaggcaaagctccaaccattcaattcaagt 6682025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 297 - 441
Target Start/End: Original strand, 6682044 - 6682198
Alignment:
Q  297 aaataagagattcaattgtgt--tgttgtgaatgtatattcaatggttgagagctaagctcaaactactcaattcaag--------ttttcattgcttct 386  Q
    |||| |||||||||||| |||  |||||||||||||||||||||| |||||||||||||||  |||| ||||||||||        ||||||||||||||    
T  6682044 aaattagagattcaattttgtattgttgtgaatgtatattcaatgattgagagctaagctctgactattcaattcaagtctcttttttttcattgcttct 6682143  T
Q  387 gctgttctacatcaatttaaatgtttgaagtgccacattgatggctttacattca 441  Q
     |||| |||||| | |||| || ||||||||||||||||||||||||| ||||||    
T  6682144 actgtcctacattagtttacatatttgaagtgccacattgatggcttttcattca 6682198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 269 - 369
Target Start/End: Complemental strand, 6771414 - 6771311
Alignment:
Q  269 aggaatagccttattattcattctcttaaaataagagattcaa--ttgtgttgttgtgaatgtatattcaatggttgaga-gctaagctcaaactactca 365  Q
    |||||||| ||||||||| ||||||||||||||||||||||||  |||||||||| | || ||||||||||||||||||| ||||||||| || || |||    
T  6771414 aggaataggcttattattgattctcttaaaataagagattcaattttgtgttgttttaaaagtatattcaatggttgagaggctaagctccaattattca 6771315  T
Q  366 attc 369  Q
    ||||    
T  6771314 attc 6771311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 373 - 450
Target Start/End: Original strand, 6671058 - 6671136
Alignment:
Q  373 ttttcattgcttctgctgttctacatcaatt-taaatgtttgaagtgccacattgatggctttacattcatgaacaatt 450  Q
    |||||||||||||| ||| |||||||||||  ||||| ||||||||||||||||||||||||| |||||||||| ||||    
T  6671058 ttttcattgcttcttctgatctacatcaatactaaatttttgaagtgccacattgatggctttgcattcatgaataatt 6671136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 394 - 443
Target Start/End: Complemental strand, 6771257 - 6771208
Alignment:
Q  394 tacatcaatttaaatgtttgaagtgccacattgatggctttacattcatg 443  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  6771257 tacatcaatttaaatatttgaagtgccacattgatggcttttcattcatg 6771208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 394 - 434
Target Start/End: Complemental strand, 6765026 - 6764986
Alignment:
Q  394 tacatcaatttaaatgtttgaagtgccacattgatggcttt 434  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6765026 tacatcaatttaaatgtttgaagtgccacattgatggcttt 6764986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 6681640 - 6681752
Alignment:
Q  15 tgaagaaccatgtagaacagaaatcagtgcattctgaatcttgctgtagagctgaagttttggaaagcgatggagcaatcgttggccaatgaatctttgt 114  Q
    ||||||| ||| | ||| ||| |||| |||||||||| ||| || ||||| ||||||||||||||         ||| || |||||||||||||||||||    
T  6681640 tgaagaagcatttcgaaaagagatcaatgcattctgagtctagccgtagatctgaagttttggaa---------gcattcattggccaatgaatctttgt 6681730  T
Q  115 gaatatatagagtgcacaataa 136  Q
     |||||||||||||||||||||    
T  6681731 taatatatagagtgcacaataa 6681752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 6771488 - 6771430
Alignment:
Q  26 gtagaacagaaatcagtgcattctgaatcttgctgtagagctgaagttttggaaagcga 84  Q
    ||||||| || |||| |||||||| |||||||  |||||||||||||||||||||||||    
T  6771488 gtagaacggagatcaatgcattcttaatcttgtcgtagagctgaagttttggaaagcga 6771430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 206 - 338
Target Start/End: Original strand, 6670897 - 6671037
Alignment:
Q  206 aagtgttgtgcttttcatctttccttt-tgtgtatgtaaatttgattatgtatatacataggtcagg-----aatagccttattattcattctcttaaaa 299  Q
    |||||||||  | |||||||||| ||| | ||||| ||| || |||||||||||||||||| | |||     |||||||||| | || | ||||||||||    
T  6670897 aagtgttgttatcttcatctttcgtttatctgtatataatttagattatgtatatacatagattagggttgcaatagccttactttttaatctcttaaaa 6670996  T
Q  300 taagagattcaattgtgt--tgttgtgaatgtatattcaat 338  Q
     |||||| |||||| |||  |||||||||||||||||||||    
T  6670997 caagagaatcaattttgtattgttgtgaatgtatattcaat 6671037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 78; Significance: 4e-36; HSPs: 4)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 17090 - 17203
Alignment:
Q  26 gtagaacagaaatcagtgcattctgaatcttgctgtagagctgaagttttggaaagcgatggagcaatcgttggccaatgaatctttgtgaatatataga 125  Q
    |||||||||| |||| |||||| |||||||||  ||||||||||||||||||||||||| |||||| || |||| |||||||||||||||||||||||||    
T  17090 gtagaacagagatcaatgcattatgaatcttgtcgtagagctgaagttttggaaagcgacggagcagtcattggtcaatgaatctttgtgaatatataga 17189  T
Q  126 gtgcacaataagtg 139  Q
    ||||||||||||||    
T  17190 gtgcacaataagtg 17203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 202 - 347
Target Start/End: Original strand, 17265 - 17413
Alignment:
Q  202 acataagtgttgtgcttttcatctttccttttgtgtatgtaaatttgattatgt-atatacataggtcaggaatagccttattattcattctcttaaaat 300  Q
    |||||||||||||  |||||||| |||||||| ||||| |||||||| |||||| | ||| |||||| |||||||| || ||||||||| ||||||||||    
T  17265 acataagtgttgtaattttcatccttccttttctgtatataaatttgtttatgtaacatatataggttaggaataggctcattattcatactcttaaaat 17364  T
Q  301 aagagattcaa--ttgtgttgttgtgaatgtatattcaatggttgagag 347  Q
     ||||| ||||  |||||||||||||||| | ||||||||||| |||||    
T  17365 gagagactcaattttgtgttgttgtgaatatttattcaatggtagagag 17413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 202 - 347
Target Start/End: Original strand, 17489 - 17637
Alignment:
Q  202 acataagtgttgtgcttttcatctttccttttgtgtatgtaaatttgattatgt-atatacataggtcaggaatagccttattattcattctcttaaaat 300  Q
    |||||||||||||  |||||||| |||||||| ||||| |||||||| |||||| | ||| |||||| |||||||| || ||||||||| ||||||||||    
T  17489 acataagtgttgtaattttcatccttccttttctgtatataaatttgtttatgtaacatatataggttaggaataggctcattattcatactcttaaaat 17588  T
Q  301 aagagattcaa--ttgtgttgttgtgaatgtatattcaatggttgagag 347  Q
     ||||| ||||  |||||||||||||||| | ||||||||||| |||||    
T  17589 gagagactcaattttgtgttgttgtgaatatttattcaatggtagagag 17637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 394 - 443
Target Start/End: Original strand, 17714 - 17763
Alignment:
Q  394 tacatcaatttaaatgtttgaagtgccacattgatggctttacattcatg 443  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  17714 tacatcaatttaaatatttgaagtgccacattgatggcttttcattcatg 17763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 9e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 373 - 429
Target Start/End: Complemental strand, 2942415 - 2942359
Alignment:
Q  373 ttttcattgcttctgctgttctacatcaatttaaatgtttgaagtgccacattgatg 429  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  2942415 ttttcattgcttctactgttctacatcaatttaaatttttgaagtgccacattgatg 2942359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 402 - 451
Target Start/End: Original strand, 46524918 - 46524967
Alignment:
Q  402 tttaaatgtttgaagtgccacattgatggctttacattcatgaacaatta 451  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  46524918 tttaaatgtttgaagtgccacattgatggctttgcattaatgaacaatta 46524967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 49884271 - 49884336
Alignment:
Q  199 tcaacataagtgttgtgcttttcatctttcc--ttttgtgtatgtaaatttgattatgtatataca 262  Q
    ||||||||||||||| | |||||||||||||  |||||||||| ||| |||||| |||||||||||    
T  49884271 tcaacataagtgttgagattttcatctttccttttttgtgtatataattttgatcatgtatataca 49884336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 297 - 375
Target Start/End: Original strand, 46524722 - 46524802
Alignment:
Q  297 aaataagagattcaattgtgt--tgttgtgaatgtatattcaatggttgagagctaagctcaaactactcaattcaagttt 375  Q
    |||| |||||||||||| |||  ||||||||||| | |||||||||| ||||||||||||| ||||  |||||| ||||||    
T  46524722 aaattagagattcaattttgtattgttgtgaatgcaaattcaatggtggagagctaagctctaactcttcaattgaagttt 46524802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 46524362 - 46524470
Alignment:
Q  17 aagaaccatgtagaacagaaatcagtgcattctgaatcttgctgtagagctgaagttttggaaagcgatggagcaatcgttggccaatgaatctttgtga 116  Q
    ||||| ||| |||||  |||| || ||||||| ||||||||  || || ||| |||||| ||||| ||   |||| ||||||  ||||||||||||||||    
T  46524362 aagaagcatctagaatcgaaagcaatgcattccgaatcttggcgtggaactgcagtttttgaaagtgacaaagcagtcgttgatcaatgaatctttgtga 46524461  T
Q  117 atatataga 125  Q
    |||||||||    
T  46524462 atatataga 46524470  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 377 - 426
Target Start/End: Original strand, 18137541 - 18137590
Alignment:
Q  377 cattgcttctgctgttctacatcaatttaaatgtttgaagtgccacattg 426  Q
    |||||||||||||||||||| |||||||||||| || ||||| |||||||    
T  18137541 cattgcttctgctgttctacgtcaatttaaatgcttaaagtggcacattg 18137590  T

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