View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14830_low_6 (Length: 432)
Name: NF14830_low_6
Description: NF14830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14830_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 125 - 417
Target Start/End: Original strand, 1656704 - 1656998
Alignment:
| Q |
125 |
ataattcagtgtaattatttggtattgattgag--tttccttagacaactgggagctctggattaaatgtaaaaaggcttgatcaagagacagatactaa |
222 |
Q |
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| T |
1656704 |
ataattcagtgtaattatttggtattgattgagagtttccttagacaactgggagctctggattaaatgtaaaaaggcttgatcaagagacagatactaa |
1656803 |
T |
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| Q |
223 |
gattggagacttaaagcaatcaggttcaaaggtctcaacagaagttgttgacatgctactcaagtatgttacaaatattaaaacataatggcctaaggtt |
322 |
Q |
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| T |
1656804 |
gattggagacttaaagcaatcaggttcaaaggtctcaacagaagttgttgacatgctactcaagtatgttacaaatattaaaacataatggcctaaggtt |
1656903 |
T |
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| Q |
323 |
agtatttaattcctagctctttcaaattattttgtaattgggcataaatgaaaccttgtttcttgttttgatcagaaaacttaaaggtgggaact |
417 |
Q |
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| T |
1656904 |
agtatttaattcctagctctttcaaattattttgtaattgggcataaatgaaaccttgtttcttgttttgatcagaaaacttaaaggtgggaact |
1656998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 49041947 - 49041876
Alignment:
| Q |
70 |
aacacgacactgataccgataggctgacacagttaataaattnnnnnnnnntcatataattcagtgtaatta |
141 |
Q |
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| T |
49041947 |
aacacgacactgataccgataggctgacacagttaataaattaaaaaaaaatcatataattcagtgtaatta |
49041876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 50
Target Start/End: Complemental strand, 48646745 - 48646715
Alignment:
| Q |
20 |
caaggtccggggttcaaactccggccaccac |
50 |
Q |
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| T |
48646745 |
caaggtccggggttcaaactccggccaccac |
48646715 |
T |
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