View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14830_low_7 (Length: 397)
Name: NF14830_low_7
Description: NF14830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14830_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 4e-91; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 177 - 393
Target Start/End: Complemental strand, 38239103 - 38238883
Alignment:
| Q |
177 |
acaaatttagaggcatcgtcatttccaacctcatccatacacaaagaacatttctctcaagagaacatgcatgtgaatatcacaccttcttgaatttctt |
276 |
Q |
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| T |
38239103 |
acaaatttagaggcatagtcatttccaacctcatccatgcacaaagaacatttctctcaagagaacatgcatgtgaatatcacaccttcttgaatttctt |
38239004 |
T |
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| Q |
277 |
agctcaagtataaaattgtcgaaggtgcg-----cgcataaacgataaaacgattttttggtaagcttaagatgataaacataatgtattcataacatca |
371 |
Q |
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| T |
38239003 |
agctcaagtataaaattgtcgaaggtgcgcataacaaataaacgataaaacga-cttttggtaagcttaagatgataaacataatgtattcataacatca |
38238905 |
T |
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| Q |
372 |
atatttactgcatagacctttg |
393 |
Q |
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|||||||||| ||||||||||| |
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| T |
38238904 |
atatttactgtatagacctttg |
38238883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 6 - 172
Target Start/End: Complemental strand, 38239326 - 38239167
Alignment:
| Q |
6 |
aaacttttcatgggaagtttcccatcattaacaatcttgatttcattttcccttttctaacaaaacaagatttcatcatatattcactaaaaccgtaatt |
105 |
Q |
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| T |
38239326 |
aaacttttcatgggaagtttcccatcattaacaatcttgatttcattttccct-------caaaacaagatttcatcatatattcactaaaaccgtaatt |
38239234 |
T |
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| Q |
106 |
caattcataaagaatacattttggaaatctattcatgctactataataaaagtagtatatgcaaaat |
172 |
Q |
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| T |
38239233 |
caattcataaagaatacattttggaaatctattcaggctactataataaaagtactatatgcaaaat |
38239167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 38256656 - 38256525
Alignment:
| Q |
28 |
catcattaacaatcttgatttcattttcccttttctaacaaaacaagatttcatcatatattcactaaaaccgtaattcaattcataaagaatacatttt |
127 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
38256656 |
catcattaacaatcttgatttcattttcccttttctgacaaaacaagatttcatcatatattcactaaaaccgtaattcaattcataaatagtacatttt |
38256557 |
T |
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| Q |
128 |
ggaaatctattcatgctactataataaaagta |
159 |
Q |
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| T |
38256556 |
ggaaatctaatcaggctactacaataaaagta |
38256525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 171 - 304
Target Start/End: Complemental strand, 38256404 - 38256269
Alignment:
| Q |
171 |
attctcacaaatttagaggcatcgtcatttccaacctcatccatacacaaagaacatttctctcaagagaacatgcatgtgaatatcacaccttcttgaa |
270 |
Q |
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|||||| ||||||||||||||||| | ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
38256404 |
attctcgcaaatttagaggcatcgccgtttccaacctcatccatgcacaaaaaacatttctctcaagagaacatgcatgtgaatatcacgccttcttgga |
38256305 |
T |
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| Q |
271 |
tttcttagct--caagtataaaattgtcgaaggtgc |
304 |
Q |
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| T |
38256304 |
tttcttatctcacaagtataaaattgtcgaaggtgc |
38256269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 227 - 393
Target Start/End: Original strand, 300458 - 300628
Alignment:
| Q |
227 |
tttctctcaagagaacatgcatgtgaatatcacaccttcttgaatttcttagctcaagtataaaattgtcgaaggtgcg-----cgcataaacgataaaa |
321 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| | | ||||||||||||| |
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| T |
300458 |
tttctctcaagagaacatgcatgtgaatatcacgccttcttggatttcttagctcaagtataaaattgtcgaaggtgagcataacaaataaacgataaaa |
300557 |
T |
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| Q |
322 |
cgattttttggtaagcttaagatgataaacataatgtattcataacatcaatatttactgcatagacctttg |
393 |
Q |
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| T |
300558 |
cga-ctcttagtgaactttagatgataaacataatgtattcatacaatcaatatttactgcatagatctttg |
300628 |
T |
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