View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14830_low_8 (Length: 374)
Name: NF14830_low_8
Description: NF14830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14830_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 185 - 354
Target Start/End: Original strand, 12800877 - 12801046
Alignment:
| Q |
185 |
gtttaaaactagggcattgtttttgaggtcataaactagaacatgtaaaatgttgataaacannnnnnnnngcttcctatttaatttatatcatcaccca |
284 |
Q |
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| T |
12800877 |
gtttaaaactagggcattgtttttgaggtcataaactagaacatgtaaaatgttgataaacttttttttttgcttcctatttaatttatatcatcaccca |
12800976 |
T |
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| Q |
285 |
acagctttttccattgttgatcttcaaaaaggttgatttccttgtgttgattccaatttaggatccatgt |
354 |
Q |
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| T |
12800977 |
acagctttttccattgttgatcttcaaaaaggttgatttccttgtgttgattccaatttaggatccatgt |
12801046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 15 - 156
Target Start/End: Original strand, 12800708 - 12800850
Alignment:
| Q |
15 |
aatattctcgattaatttccttgtcaagaggtaaatataattatttttgtaagtttcattgagctcgaaggtttttcctgtcttgatggcacat-catcg |
113 |
Q |
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| T |
12800708 |
aatattctcgactaatttccttatcaagaggtaaatataattatttttgtaagtttcattgagctcgaaggtttttcatgtcttgatggcacatacattg |
12800807 |
T |
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| Q |
114 |
cacattttagaattcataaactaaaataccaattgtcaattac |
156 |
Q |
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| T |
12800808 |
cacattttagaattcataaactaaaataccaattgtcaattac |
12800850 |
T |
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