View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14831_high_1 (Length: 425)
Name: NF14831_high_1
Description: NF14831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14831_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 419
Target Start/End: Original strand, 46723572 - 46723973
Alignment:
| Q |
18 |
caatttttcagcttactaatttgggactcttaaattcttgttaataatcagtgtgtgtgagaatatacccattgtcctgtgtggaaacaaggttgatgtg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46723572 |
caatttttcagcttactaatttgggactcttaaattcttgttaataatcagtgtgtgtgagaatatacccattgtcctgtgtggaaacaaggttgatgtg |
46723671 |
T |
|
| Q |
118 |
aagaatagacagatcaaagcaaagcaagttatatttcacaggaagaagaatctacaatactatgaaatatctgcaaagagtaactataatttcgagaaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46723672 |
aagaatagacagatcaaagcaaagcaagttatatttcacaggaagaagaatctacaatactatgaaatatctgcaaagagtaactataatttcgagaaac |
46723771 |
T |
|
| Q |
218 |
ctttcttataccttgccaagaaacttgcagggtaagtaactaattgaatacactctattcattctttgatatatatgccaatgtcatgattgatgaatgg |
317 |
Q |
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| T |
46723772 |
ctttcttataccttgccaagaaacttgcagggtaagtaactaattgaatatactctattcattctttgatatatatgccaatgtcatgattgatgaatgg |
46723871 |
T |
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| Q |
318 |
tagcaaattatttactgattcgtgttatgattccaatttccagtaatatgaaccttcactttgtggaaatgcctgctcttgctcctcctgaagtcgcctt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
46723872 |
tagcaaattatttactgattcgtgttatgattccaatttccagtaatatgaaccttcactttgtggagatgcctgctcttgctcctcctgaagtcgcctt |
46723971 |
T |
|
| Q |
418 |
tg |
419 |
Q |
| |
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|| |
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| T |
46723972 |
tg |
46723973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 88 - 251
Target Start/End: Complemental strand, 49685450 - 49685287
Alignment:
| Q |
88 |
attgtcctgtgtggaaacaaggttgatgtgaagaatagacagatcaaagcaaagcaagttatatttcacaggaagaagaatctacaatactatgaaatat |
187 |
Q |
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| T |
49685450 |
attgttctctgtggtaataaggttgatgtgaagaacagacaagtaaaggcaaagcaggttaccttccacaggaagaagaatttgcagtactatgagattt |
49685351 |
T |
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| Q |
188 |
ctgcaaagagtaactataatttcgagaaacctttcttataccttgccaagaaacttgcagggta |
251 |
Q |
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| || ||||| |||||||| || ||||| |||||| | |||||||||| ||||||||||||||| |
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| T |
49685350 |
cagctaagagcaactataactttgagaagcctttcctttaccttgccaggaaacttgcagggta |
49685287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 103 - 251
Target Start/End: Complemental strand, 49690801 - 49690653
Alignment:
| Q |
103 |
aacaaggttgatgtgaagaatagacagatcaaagcaaagcaagttatatttcacaggaagaagaatctacaatactatgaaatatctgcaaagagtaact |
202 |
Q |
| |
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||||||||||||||||| || || || | || |||||||| |||| || ||||||||||||||| | || |||||||| || || || ||||| |||| |
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| T |
49690801 |
aacaaggttgatgtgaaaaacaggcaagtgaaggcaaagcaggttaccttccacaggaagaagaatttgcagtactatgagatttcagctaagagcaact |
49690702 |
T |
|
| Q |
203 |
ataatttcgagaaacctttcttataccttgccaagaaacttgcagggta |
251 |
Q |
| |
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|||| || ||||| |||||| | |||||||||| ||||||||||||||| |
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| T |
49690701 |
ataactttgagaagcctttcctttaccttgccaggaaacttgcagggta |
49690653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 103 - 251
Target Start/End: Complemental strand, 49695631 - 49695483
Alignment:
| Q |
103 |
aacaaggttgatgtgaagaatagacagatcaaagcaaagcaagttatatttcacaggaagaagaatctacaatactatgaaatatctgcaaagagtaact |
202 |
Q |
| |
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|||||||||||||||||||| ||||| | || |||||||| |||| || ||||| || |||||| | || |||||||| || || || ||||| |||| |
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| T |
49695631 |
aacaaggttgatgtgaagaacagacaagtaaaggcaaagcaggttaccttccacagaaaaaagaatttgcagtactatgagatttcagctaagagcaact |
49695532 |
T |
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| Q |
203 |
ataatttcgagaaacctttcttataccttgccaagaaacttgcagggta |
251 |
Q |
| |
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|||| || ||||| |||||||| ||||| |||| ||||||||||||||| |
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| T |
49695531 |
ataactttgagaagcctttcttgtacctagccaggaaacttgcagggta |
49695483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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