View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14831_high_3 (Length: 414)
Name: NF14831_high_3
Description: NF14831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14831_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 20 - 390
Target Start/End: Complemental strand, 35109566 - 35109196
Alignment:
| Q |
20 |
gctgtttggtgtattggacctatttttaacttctattttattgatcatcaccgagaaacacttctattttacaatcaccatgaagaattttaaagcattc |
119 |
Q |
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| T |
35109566 |
gctgcttggtgtattggacctattttaaacttctattttattgatcatcaccgagaaacacttctattttacaatcaccatgaagaattttaaagcattc |
35109467 |
T |
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| Q |
120 |
aacgactttcttcttgggtgaaatttaccgaaccatgaatgtccttgtgaatgcattctttctagcaagtgccaaggccgcctcaattcaacttagattg |
219 |
Q |
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| T |
35109466 |
aacgactttcttcttgggtgaaatttaccgaaccatgaatgtccttgtgaatgcattctttctagcaagtgccaaggccgcctcaattcaacttagattg |
35109367 |
T |
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| Q |
220 |
cccttatcaacattctacctcctaagtcatcggtcctgatcaacatctacttcagtttcgcttgaagtgctcgtatgtacatcccttccatcgaaatgag |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35109366 |
cccttatcaacattctacctcctaagtcatcggtcctgatcaacatctacttcagtttcgcttgaagtgctcgtatgtacatcccttccatcgaaatgag |
35109267 |
T |
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| Q |
320 |
gcggtggcttagcacaaccaagtagcaatggtacacattccgaattcaggcacatatgcttcagtcaactc |
390 |
Q |
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| T |
35109266 |
gtggtggcttagcacaaccaagtagcaatggtacacattccgaatccaggcacatatgcttcagtcaactc |
35109196 |
T |
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