View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14831_low_1 (Length: 469)
Name: NF14831_low_1
Description: NF14831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14831_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 435; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Complemental strand, 42060290 - 42059848
Alignment:
| Q |
18 |
atcccttggtaacaataccaggagctgtagggcatttagccaagggacaatgatcatctgcctcaagaccccaccaagttggaccaaagacatcataaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42060290 |
atcccttggtaacaataccaggagctgtagggcatttagccaagggacaatgatcatctgcctcaagaccccaccaagttggaccaaagacatcataaga |
42060191 |
T |
|
| Q |
118 |
ttgaagtgaaaaatagagcaacacagccatgaaagcaataccagcatccaaagcagctgagagaatgtaagtgtgtctagcccaccatgccttgaaattt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42060190 |
ttgaagtgaaaaatagagcaacacagccatgaaagcaataccagcatccaaagcagctgagagaatgtaagtgtgtctagcccaccatgccttgaaattt |
42060091 |
T |
|
| Q |
218 |
ttgtaaacatagaaattgaagaagattccaactactccccatgaaatataattgattgatctagctggtggtataccactggcacctccaatgataagtg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42060090 |
ttgtaaacatagaaattgaagaagattccaactactccccatgaaatataattgattgatctagctggtggtataccactggcacctccaatgataagtg |
42059991 |
T |
|
| Q |
318 |
gcatgttgatgagttcaatccacttgtggttcgggtatttgcgagctagaagccacactggaacaggcgcaagtagaccgatgaggaaaaaccaattcat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42059990 |
gcatgttgatgagttcaatccacttgtggttcgggtatttgcgagctagaagccacactggaacaggcgcaagtagaccgatgaggaaaaaccaattcat |
42059891 |
T |
|
| Q |
418 |
tccagggtaaattccatccttggtaaacatcctctgtgctcct |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
42059890 |
tccagggtaaattccatccttggtaaacatcctttgtggtcct |
42059848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 31 - 450
Target Start/End: Complemental strand, 42084154 - 42083735
Alignment:
| Q |
31 |
aataccaggagctgtagggcatttagccaagggacaatgatcatctgcctcaagaccccaccaagttggaccaaagacatcataagattgaagtgaaaaa |
130 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||| |||||||||| || |||||||||||||| |||||||| || ||||||||||||||||| |||| |
|
|
| T |
42084154 |
aataccaggagctgtagggcaattaaccaagggacactgatcatctgacttaagaccccaccaagctggaccaatgatatcataagattgaagtgcaaaa |
42084055 |
T |
|
| Q |
131 |
tagagcaacacagccatgaaagcaataccagcatccaaagcagctgagagaatgtaagtgtgtctagcccaccatgccttgaaatttttgtaaacataga |
230 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42084054 |
tagagcaacacagccatgaaagcaacaccagcatccaaagcagctgagagaatgtaagtgtgtctagcccaccatgccttgaaatttttgtaaacataga |
42083955 |
T |
|
| Q |
231 |
aattgaagaagattccaactactccccatgaaatataattgattgatctagctggtggtataccactggcacctccaatgataagtggcatgttgatgag |
330 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
42083954 |
aattgaagaagattccaacaactccccatgaaatataattgattgacctagctggtggtataccactagcacctccaattataagtggcatgttgatgag |
42083855 |
T |
|
| Q |
331 |
ttcaatccacttgtggttcgggtatttgcgagctagaagccacactggaacaggcgcaagtagaccgatgaggaaaaaccaattcattccagggtaaatt |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
42083854 |
ttcaatccacttgtggttcgggtatttgcgagctagaaaccacaccggaacaggcgcaagtagaccgatgaggaaaaaccaattcattccagggtatatt |
42083755 |
T |
|
| Q |
431 |
ccatccttggtaaacatcct |
450 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
42083754 |
ccatccttggtgaacatcct |
42083735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 31 - 450
Target Start/End: Complemental strand, 42075574 - 42075155
Alignment:
| Q |
31 |
aataccaggagctgtagggcatttagccaagggacaatgatcatctgcctcaagaccccaccaagttggaccaaagacatcataagattgaagtgaaaaa |
130 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||| ||||||||||| | |||||||||||||| |||| |
|
|
| T |
42075574 |
aataccaggagctgtagggcaattagccaagggacaatgatcatctgacttaagaccccaccaagctggaccaaagataccataagattgaagtagaaaa |
42075475 |
T |
|
| Q |
131 |
tagagcaacacagccatgaaagcaataccagcatccaaagcagctgagagaatgtaagtgtgtctagcccaccatgccttgaaatttttgtaaacataga |
230 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
42075474 |
tagagcaacacagccatgaaagcaacaccagcatccaaagcagctgagagaatgtaagtgtgtctagcccaccataccttgaattttttgtaaacataga |
42075375 |
T |
|
| Q |
231 |
aattgaagaagattccaactactccccatgaaatataattgattgatctagctggtggtataccactggcacctccaatgataagtggcatgttgatgag |
330 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||| |||| ||| ||||||||| ||||||||||| ||| |
|
|
| T |
42075374 |
tattgaagaagattccaacaactccccatgaaatgtaactgattgatctagctggtggtatacctttggcccctgcaatgataattggcatgttgacgag |
42075275 |
T |
|
| Q |
331 |
ttcaatccacttgtggttcgggtatttgcgagctagaagccacactggaacaggcgcaagtagaccgatgaggaaaaaccaattcattccagggtaaatt |
430 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
42075274 |
ttcaatccactttcggtttgggtatttgcgagctagaagccacactggaacaggcgcaagtagaccgatgaggaaaaaccaattcaatccagggtatatt |
42075175 |
T |
|
| Q |
431 |
ccatccttggtaaacatcct |
450 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
42075174 |
ccatccttggtgaacatcct |
42075155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 4e-42; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 73 - 452
Target Start/End: Original strand, 36523153 - 36523532
Alignment:
| Q |
73 |
atctgcctcaagaccccaccaagttggaccaaagacatcataagattgaagtgaaaaatagagcaacacagccatgaaagcaataccagcatccaaagca |
172 |
Q |
| |
|
|||||| |||||||||||||||||||||||| | | | ||||||||||||| |||||||| || | | | | || || |||| |||||||| ||| || |
|
|
| T |
36523153 |
atctgcttcaagaccccaccaagttggaccataaataccataagattgaagagaaaaataaagtagtaaacctataaaggcaactccagcatctaaacca |
36523252 |
T |
|
| Q |
173 |
gctgagagaatgtaagtgtgtctagcccaccatgccttgaaatttttgtaaacatagaaattgaagaagattccaactactccccatgaaatataattga |
272 |
Q |
| |
|
|| || || || ||||| ||||||||||||||||||||||| ||| | ||||||||||||||||| | |||||||| | |||||| | ||| ||||| | |
|
|
| T |
36523253 |
gcagaaaggatataagtatgtctagcccaccatgccttgaactttctataaacatagaaattgaaaaccattccaacaattccccaagtaatgtaattca |
36523352 |
T |
|
| Q |
273 |
ttgatctagctggtggtataccactggcacctccaatgataagtggcatgttgatgagttcaatccacttgtggttcgggtatttgcgagctagaagcca |
372 |
Q |
| |
|
||||| ||||||| || ||| |||||| | ||||| || ||||| ||||||| ||||||||| ||||| | ||||| ||| |||||||| |
|
|
| T |
36523353 |
cagatctcactggtggaatgccagatgcacctgcggcgataataggaatgttaatgagttgaatccacttttggttacgaaatttgagagaaagaagcca |
36523452 |
T |
|
| Q |
373 |
cactggaacaggcgcaagtagaccgatgaggaaaaaccaattcattccagggtaaattccatccttggtaaacatcctct |
452 |
Q |
| |
|
|||||||||||| ||||||||||| || ||||||||||||||||| |||| |||| || || ||||||||||| |||| |
|
|
| T |
36523453 |
cactggaacaggtgcaagtagaccaataaggaaaaaccaattcatctcaggataaacgccgtctttggtaaacattctct |
36523532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 38 - 416
Target Start/End: Original strand, 36529954 - 36530329
Alignment:
| Q |
38 |
ggagctgtagggcatttagccaagggacaatgatcatctgcctcaagaccccaccaagttggaccaaagacatcataagattgaagtgaaaaatagagca |
137 |
Q |
| |
|
||||||||||||||||||||||| || || || || || |||||||||||||||||||||||| | | | | ||||||||||| |||||||| || | |
|
|
| T |
36529954 |
ggagctgtagggcatttagccaaagggcagtggtc---tggttcaagaccccaccaagttggaccataaataccgtaagattgaagagaaaaataaagta |
36530050 |
T |
|
| Q |
138 |
acacagccatgaaagcaataccagcatccaaagcagctgagagaatgtaagtgtgtctagcccaccatgccttgaaatttttgtaaacatagaaattgaa |
237 |
Q |
| |
|
| | | || || |||| |||||||| ||| ||||||| || |||||||| ||||||||||||||||| ||||| ||| | ||||||||||||||||| |
|
|
| T |
36530051 |
gtaaacctataaaggcaactccagcatctaaaccagctgaaaggatgtaagtatgtctagcccaccatgctttgaactttctataaacatagaaattgaa |
36530150 |
T |
|
| Q |
238 |
gaagattccaactactccccatgaaatataattgattgatctagctggtggtataccactggcacctccaatgataagtggcatgttgatgagttcaatc |
337 |
Q |
| |
|
|| |||||||| | ||||| | ||||||||| | ||||| | ||||| || || |||||| ||||||||| || |||||||||| || |||| |
|
|
| T |
36530151 |
aaatattccaacaatcccccaagtaatataattcacagatctcacaggtgggatgtcagatgcacctgcaatgataataggaatgttgatgaattgaatc |
36530250 |
T |
|
| Q |
338 |
cacttgtggttcgggtatttgcgagctagaagccacactggaacaggcgcaagtagaccgatgaggaaaaaccaattca |
416 |
Q |
| |
|
||||| ||||| || ||||| ||| ||||||||||| ||||| || || | ||||||||| |||||||||||||||| |
|
|
| T |
36530251 |
cacttttggttgggaaatttgagagaaagaagccacacgggaactggtgcgattagaccgataaggaaaaaccaattca |
36530329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 38 - 452
Target Start/End: Original strand, 36535566 - 36535977
Alignment:
| Q |
38 |
ggagctgtagggcatttagccaagggacaatgatcatctgcctcaagaccccaccaagttggaccaaagacatcataagattgaagtgaaaaatagagca |
137 |
Q |
| |
|
||||||||||| ||| ||||||| || || ||||| ||| ||||| |||||||| ||||||||||| | | |||| |||||||| |||||||| || | |
|
|
| T |
36535566 |
ggagctgtaggacatctagccaaagggcagtgatc---tgcttcaaggccccaccatgttggaccaaaaataccataggattgaagagaaaaataaagta |
36535662 |
T |
|
| Q |
138 |
acacagccatgaaagcaataccagcatccaaagcagctgagagaatgtaagtgtgtctagcccaccatgccttgaaatttttgtaaacatagaaattgaa |
237 |
Q |
| |
|
| | |||| ||||||| |||||||| ||| ||||||||||||| ||||| |||||||||||||| | |||| ||| | ||||||||||||||||| |
|
|
| T |
36535663 |
ctaaacccataaaagcaactccagcatctaaaccagctgagagaatataagtatgtctagcccaccaaactctgaactttctataaacatagaaattgaa |
36535762 |
T |
|
| Q |
238 |
gaagattccaactactccccatgaaatataattgattgatctagctggtggtataccactggcacctccaatgataagtggcatgttgatgagttcaatc |
337 |
Q |
| |
|
|| |||||||| | |||||| | ||||||||| | ||||| || || ||| | |||||| ||||||||| || |||||||| |||| |||| |
|
|
| T |
36535763 |
aaacattccaacaattccccaagtaatataattcacagatctcctgggaggaatagtagatgcacctacaatgataataggaatgttgataagtttaatc |
36535862 |
T |
|
| Q |
338 |
cacttgtggttcgggtatttgcgagctagaagccacactggaacaggcgcaagtagaccgatgaggaaaaaccaattcattccagggtaaattccatcct |
437 |
Q |
| |
|
||||||||||| || ||||| || ||||||||||| || ||||| |||| ||| || || ||||||||||||||||| ||||| |||| || || | |
|
|
| T |
36535863 |
cacttgtggttaggaaatttgatagaaagaagccacaccggtacaggtgcaattaggccaataaggaaaaaccaattcatcccaggataaacgccgtcat |
36535962 |
T |
|
| Q |
438 |
tggtaaacatcctct |
452 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
36535963 |
tggtaaacattctct |
36535977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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