View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14831_low_10 (Length: 344)
Name: NF14831_low_10
Description: NF14831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14831_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 5075236 - 5074921
Alignment:
| Q |
18 |
gttattgggtctattaaatctactattattaagtctgactatgtttaatgtgtatgtctatctaatgaatgaaacattactatgttattatatctatgtt |
117 |
Q |
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| T |
5075236 |
gttattgggtctattaaatctactattattaagtctgactatgtttaatgtgtatgtctatctaatgaatgaaacattattatgttattatatctatgtt |
5075137 |
T |
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| Q |
118 |
acttatatttacctcaagtttttacattacaagacatgcttttgttatgtatatacactcttcttttgttcataatttgtatcttaataataagagtttt |
217 |
Q |
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| T |
5075136 |
acttatattta-ctcaagtttttacattacaagacatgcttttgttatgtatatacactcttcttttgttcataatttgtatcttaataataagagtttt |
5075038 |
T |
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| Q |
218 |
aatttgaaatacagtttatgctgaattaagaaaacaatggaa---actaacaatcaatagaaaaatacacaaaacatgtgatttaaggccagacaaattt |
314 |
Q |
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| T |
5075037 |
aatttgaaatacagttta-gctgaattaagaaaacaatggaaactactaacaatcaatagaaaaatacacaaaacatgtgatttaaggccagacaaattt |
5074939 |
T |
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| Q |
315 |
cacgcacaattacctttg |
332 |
Q |
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| T |
5074938 |
cacgcacaattacatttg |
5074921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 5088077 - 5088009
Alignment:
| Q |
203 |
aataataagagttttaatttgaaatacagtttatgctgaattaagaaaacaatggaaactaacaatcaa |
271 |
Q |
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| T |
5088077 |
aataattaaagttttaattagaaatacagtttatgcagaattgaaaaaccaatgaaaacttacaatcaa |
5088009 |
T |
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