View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14831_low_12 (Length: 340)
Name: NF14831_low_12
Description: NF14831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14831_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 7 - 333
Target Start/End: Original strand, 37841205 - 37841531
Alignment:
| Q |
7 |
gtattgttgggtaatggttttacaggaaatgtcccttcagagttaagcaattgtagtttgctcgagtatttagacctttctaagaatagattcagtggaa |
106 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37841205 |
gtattgttgggtaatggtttcacaggaaatgtcccttcagagttaagcaattgtagtttgcttgagtatttagacctttctaagaatagattcagtggaa |
37841304 |
T |
|
| Q |
107 |
agataccatatagtttgaaaaagttgcaaaatttaaagtttataggactgtcttccaatctgctgactggtgaaattccagattcattgtttgaaattca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37841305 |
agataccatatagtttgaaaaagttgcaaaatttaaaggttataggactgtcttccaatctgctgactggtgaaattccagattcattgtttgaaattca |
37841404 |
T |
|
| Q |
207 |
atccctcgaagaagtgagcctacacagtaaccttctcagtggccctatcccaacaaatattggaaacttgactcaattattgaggttgtatctacacggg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
37841405 |
ttccctcgaagaagtgagcctacacagtaaccttctcagtggccctatcccaacaaatattggaaacttgactcatctattgaggttgtatctacatcgt |
37841504 |
T |
|
| Q |
307 |
aatatgttttctgtaactattccttca |
333 |
Q |
| |
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||||||||||| | |||||||||||| |
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| T |
37841505 |
aatatgttttcagggactattccttca |
37841531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 10 - 338
Target Start/End: Original strand, 37829885 - 37830213
Alignment:
| Q |
10 |
ttgttgggtaatggttttacaggaaatgtcccttcagagttaagcaattgtagtttgctcgagtatttagacctttctaagaatagattcagtggaaaga |
109 |
Q |
| |
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||||| ||||||||||| ||||||| || ||||||||||||||||| ||||| ||||| || ||||||| |||||| |||| ||||||||||||| | |
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| T |
37829885 |
ttgttcggtaatggtttctcaggaaacgtgccttcagagttaagcaactgtagcttgcttcagaatttagatctttctgagaacagattcagtggaagta |
37829984 |
T |
|
| Q |
110 |
taccatatagtttgaaaaagttgcaaaatttaaagtttataggactgtcttccaatctgctgactggtgaaattccagattcattgtttgaaattcaatc |
209 |
Q |
| |
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|| |||||||||||| |||||||||||||||||||||| || || ||||||||||||| ||||||||| ||||||||||||| || |||||||||||||| |
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| T |
37829985 |
tatcatatagtttgataaagttgcaaaatttaaagtttttaagattgtcttccaatcttctgactggtaaaattccagattctttatttgaaattcaatc |
37830084 |
T |
|
| Q |
210 |
cctcgaagaagtgagcctacacagtaaccttctcagtggccctatcccaacaaatattggaaacttgactcaattattgaggttgtatctacacgggaat |
309 |
Q |
| |
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||| |||||||||||||| |||| ||||||||| || ||| ||||||||| |||||||||||| ||||| | |||| |||||||||||||| | ||| |
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| T |
37830085 |
ccttgaagaagtgagcctgcacaataaccttcttagcggcaatatcccaaccaatattggaaacatgactaatctattaaggttgtatctacatagtaat |
37830184 |
T |
|
| Q |
310 |
atgttttctgtaactattccttcatctct |
338 |
Q |
| |
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|||||||| | || |||||||||||||| |
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| T |
37830185 |
atgttttcagggaccattccttcatctct |
37830213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 7 - 338
Target Start/End: Original strand, 37835586 - 37835917
Alignment:
| Q |
7 |
gtattgttgggtaatggttttacaggaaatgtcccttcagagttaagcaattgtagtttgctcgagtatttagacctttctaagaatagattcagtggaa |
106 |
Q |
| |
|
|||||||| || |||||||| ||||||| || ||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
37835586 |
gtattgtttggaaatggtttctcaggaaaagtgccttcagagttaagcaactgtagtttgcttgagtatttagacctttctgagaatagattcagtggaa |
37835685 |
T |
|
| Q |
107 |
agataccatatagtttgaaaaagttgcaaaatttaaagtttataggactgtcttccaatctgctgactggtgaaattccagattcattgtttgaaattca |
206 |
Q |
| |
|
||||||||| ||||||||| ||||| ||| |||| |||||| | || || ||||||||||| | ||||||||||||||||| |||||| |||||| |
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| T |
37835686 |
agataccatctagtttgaataagttacaacttttacggtttatgagtctctcatccaatctgcttatcggtgaaattccagattccttgtttaaaattcc |
37835785 |
T |
|
| Q |
207 |
atccctcgaagaagtgagcctacacagtaaccttctcagtggccctatcccaacaaatattggaaacttgactcaattattgaggttgtatctacacggg |
306 |
Q |
| |
|
|||| | |||||||| | ||| |||||||||||||| ||||| |||||||| || |||||||||||||||||||| ||||||||||||||||| | || |
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| T |
37835786 |
atccttggaagaagtaaacctgcacagtaaccttcttagtggtcctatcccgaccaatattggaaacttgactcatctattgaggttgtatctatatggt |
37835885 |
T |
|
| Q |
307 |
aatatgttttctgtaactattccttcatctct |
338 |
Q |
| |
|
||| ||| || | ||||||||||||||||| |
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|
| T |
37835886 |
aatcagttgtcagggactattccttcatctct |
37835917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 10 - 300
Target Start/End: Original strand, 37848964 - 37849254
Alignment:
| Q |
10 |
ttgttgggtaatggttttacaggaaatgtcccttcagagttaagcaattgtagtttgctcgagtatttagacctttctaagaatagattcagtggaaaga |
109 |
Q |
| |
|
||||| ||||||| ||| | ||||| || |||||||||||||| || ||||||||||| || ||||||| |||||| |||| |||||||||||||||| |
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| T |
37848964 |
ttgtttggtaatgctttctccggaaaagtaccttcagagttaagtaactgtagtttgcttcagaatttagagctttctgagaacagattcagtggaaaga |
37849063 |
T |
|
| Q |
110 |
taccatatagtttgaaaaagttgcaaaatttaaagtttataggactgtcttccaatctgctgactggtgaaattccagattcattgtttgaaattcaatc |
209 |
Q |
| |
|
||||||||| ||||||||| ||||| || ||| ||||||| | | || |||||||| || |||||||||||||||||||||| |||||| |||||||||| |
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| T |
37849064 |
taccatatactttgaaaaatttgcagaagttacagtttatggcattggcttccaatatgttgactggtgaaattccagattctttgtttcaaattcaatc |
37849163 |
T |
|
| Q |
210 |
cctcgaagaagtgagcctacacagtaaccttctcagtggccctatcccaacaaatattggaaacttgactcaattattgaggttgtatcta |
300 |
Q |
| |
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||| |||||||| ||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37849164 |
ccttgaagaagttagcctgcacagtaacctacttagtggtcctatcccaacaaatattggaaacttgactcgtctattgaggttgtatcta |
37849254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 29 - 338
Target Start/End: Original strand, 36864369 - 36864681
Alignment:
| Q |
29 |
caggaaatgtcccttcagagttaagcaattgtagtttgctcgagtatttagacctttctaagaatagattcagtggaaagataccatatagtttgaaaaa |
128 |
Q |
| |
|
||||||| || ||||||||||||||||| ||||||||||| ||| | |||||||||||| |||||||||| | |||||||||||| |||||||||||| |
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|
| T |
36864369 |
caggaaaggtgccttcagagttaagcaactgtagtttgctagagaagttagacctttctgagaatagatttaatggaaagataccgcatagtttgaaaag |
36864468 |
T |
|
| Q |
129 |
gttgcaaaatttaaagtttataggactgtcttccaatctgctgactggtgaaattccagattcattgtttgaaattcaatccctcgaagaagtgagccta |
228 |
Q |
| |
|
| | ||||||||||| ||| || ||||||||||| || |||||||||||||||||||||| || |||||||||| ||||| |||||||||||||| |
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|
| T |
36864469 |
gctaagaaatttaaagtctatgagattgtcttccaatttgttgactggtgaaattccagattctttatttgaaattccttcccttgaagaagtgagcctg |
36864568 |
T |
|
| Q |
229 |
cacagtaaccttctcagtggccctatcccaacaaatattggaaacttgactcaattattgag---gttgtatctacacgggaatatgttttctgtaacta |
325 |
Q |
| |
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|||| ||||||||| ||||| ||| ||||| |||||||||||||||||||| ||||||| || |||||| | || ||||||||||| | |||| |
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| T |
36864569 |
cacaataaccttcttagtggaaatattccaaccaatattggaaacttgactcatctattgagactgtattatctatatggtaatatgttttcagggacta |
36864668 |
T |
|
| Q |
326 |
ttccttcatctct |
338 |
Q |
| |
|
||||||||||||| |
|
|
| T |
36864669 |
ttccttcatctct |
36864681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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