View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14831_low_13 (Length: 327)

Name: NF14831_low_13
Description: NF14831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14831_low_13
NF14831_low_13
[»] chr1 (4 HSPs)
chr1 (136-267)||(39495637-39495768)
chr1 (6-80)||(39495507-39495581)
chr1 (172-307)||(50092003-50092138)
chr1 (243-307)||(13133063-13133127)
[»] chr4 (2 HSPs)
chr4 (234-307)||(25241876-25241948)
chr4 (172-210)||(38948532-38948570)
[»] chr8 (2 HSPs)
chr8 (172-211)||(13403532-13403571)
chr8 (244-306)||(12230269-12230331)
[»] chr3 (1 HSPs)
chr3 (177-211)||(14609073-14609107)
[»] chr7 (2 HSPs)
chr7 (177-209)||(26788595-26788627)
chr7 (171-211)||(38106950-38106990)
[»] chr6 (1 HSPs)
chr6 (171-211)||(1309321-1309361)


Alignment Details
Target: chr1 (Bit Score: 96; Significance: 5e-47; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 136 - 267
Target Start/End: Original strand, 39495637 - 39495768
Alignment:
Q  136 gtattagagcatgactcagttactatagtacgtatattttgttttttaacaagtcaaaatcagatatattaacaaataattacgcttcatagtagaatga 235  Q
    ||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||| | ||||||||||||| ||||| ||||| |||||||||||    
T  39495637 gtatttgagcatgactcagttactatactacgtatattttattttttaacaagtcaaaatgaaatatattaacaaacaattatgcttcttagtagaatga 39495736  T
Q  236 gttctttaagaaacagaacaaaaatacaacaa 267  Q
     |||||||||||||||||||||||||||||||    
T  39495737 attctttaagaaacagaacaaaaatacaacaa 39495768  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 39495507 - 39495581
Alignment:
Q  6 aggagcagagaagtttgtggaaaaaagacaaaataaaggggggaaaattcatttggaacttacatgcctttcttg 80  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  39495507 aggagtagagaagtttgtggaaaaaagacaaaataaagggggggaaattcatttggaacttacatacctttcttg 39495581  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 307
Target Start/End: Original strand, 50092003 - 50092138
Alignment:
Q  172 ttttgttttttaacaagtcaaaatcagatatattaacaaataattacgcttcatagtagaatgagttctttaagaaacagaacaaaaatacaacaatcaa 271  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||  ||| | ||  | || |||| | | |||||  ||||||||| ||||||| |||     
T  50092003 tttttttttttaacaagtcaaaatgagatatattaacaaataattctgctccctaacaaaaggagtgcgtaaagaaggagaacaaaattacaacattcag 50092102  T
Q  272 tccttaaaaattaaaatagaggaaaacaacggtcag 307  Q
    || |||||  | | ||||||| ||||||||||||||    
T  50092103 tctttaaagttcagaatagagaaaaacaacggtcag 50092138  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 13133063 - 13133127
Alignment:
Q  243 aagaaacagaacaaaaatacaacaatcaatccttaaaaattaaaatagaggaaaacaacggtcag 307  Q
    ||||| ||||| |||| ||||||||||||||||||  ||| ||||||| || |||| ||||||||    
T  13133063 aagaagcagaataaaattacaacaatcaatccttatgaatcaaaatagtggtaaactacggtcag 13133127  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 307
Target Start/End: Original strand, 25241876 - 25241948
Alignment:
Q  234 gagttctttaagaaacagaacaaaaatacaacaatcaatccttaaaaattaaaatagaggaaaacaacggtcag 307  Q
    |||| ||||||||| |||||||||| |||||||  |||||||||||||| |||||||| |||||||| ||||||    
T  25241876 gagtgctttaagaagcagaacaaaattacaacatccaatccttaaaaatgaaaataga-gaaaacaaaggtcag 25241948  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 38948570 - 38948532
Alignment:
Q  172 ttttgttttttaacaagtcaaaatcagatatattaacaa 210  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  38948570 tttttttttttaacaagtcaaaatgagatatattaacaa 38948532  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 13403532 - 13403571
Alignment:
Q  172 ttttgttttttaacaagtcaaaatcagatatattaacaaa 211  Q
    |||| ||||||||||||||||||| |||||||||||||||    
T  13403532 tttttttttttaacaagtcaaaatgagatatattaacaaa 13403571  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 12230269 - 12230331
Alignment:
Q  244 agaaacagaacaaaaatacaacaatcaatccttaaaaattaaaatagaggaaaacaacggtca 306  Q
    |||| |||||||||| |||||||||||||||||   ||| ||||||| || ||||||||||||    
T  12230269 agaagcagaacaaaattacaacaatcaatccttctgaatcaaaatagtggtaaacaacggtca 12230331  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 211
Target Start/End: Complemental strand, 14609107 - 14609073
Alignment:
Q  177 ttttttaacaagtcaaaatcagatatattaacaaa 211  Q
    ||||||||||||||||||| |||||||||||||||    
T  14609107 ttttttaacaagtcaaaatgagatatattaacaaa 14609073  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 209
Target Start/End: Complemental strand, 26788627 - 26788595
Alignment:
Q  177 ttttttaacaagtcaaaatcagatatattaaca 209  Q
    ||||||||||||||||||| |||||||||||||    
T  26788627 ttttttaacaagtcaaaatgagatatattaaca 26788595  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 38106950 - 38106990
Alignment:
Q  171 attttgttttttaacaagtcaaaatcagatatattaacaaa 211  Q
    ||||| ||||| ||||||||||||| |||||||||||||||    
T  38106950 attttttttttcaacaagtcaaaatgagatatattaacaaa 38106990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 1309361 - 1309321
Alignment:
Q  171 attttgttttttaacaagtcaaaatcagatatattaacaaa 211  Q
    ||||| |||||||||||| |||||| |||||||||||||||    
T  1309361 atttttttttttaacaagccaaaatgagatatattaacaaa 1309321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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