View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14831_low_14 (Length: 322)
Name: NF14831_low_14
Description: NF14831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14831_low_14 |
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| [»] chr8 (8 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 7458259 - 7458580
Alignment:
| Q |
1 |
ctctatcagaagtcgaacaccatgtggagaagctggatcctgaactgccactcctctaattaacatgcaaggaagataaaaatattatttaaagtgatac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
7458259 |
ctctatcagaagtcgaacaccatgtggagaagctggatcctgaactgccactcctctaattaacatgcaaggaagataaaattattacttaaagtgatac |
7458358 |
T |
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| Q |
101 |
taatgatcattttacaactgttttagaagagatacaattatgtttaatagaaatataaaagttagttagagtttgttattagggcgttacttcgttgatt |
200 |
Q |
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| T |
7458359 |
taatgatcattttacaactgttttagaggagatacaagtctgtttaatagaaatataaaagttagttagagtttgttattagggcgttacttcgttgatt |
7458458 |
T |
|
| Q |
201 |
tgtagttattaccactgagaatcttagatggcacctcatgaacattnnnnnnntatgttttagatcaatatctttttnnnnnnntggaccgacccaagat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
7458459 |
tgtagttattaccactgagaatcttagatggcacctcatgaacattaaaaaaatatgttttagatcaatatctttttaaaaaaatggaccgacccaagat |
7458558 |
T |
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| Q |
301 |
gtatggttttgtaaggttacct |
322 |
Q |
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||| |||||||||||||||||| |
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| T |
7458559 |
gtacggttttgtaaggttacct |
7458580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 7470661 - 7470982
Alignment:
| Q |
1 |
ctctatcagaagtcgaacaccatgtggagaagctggatcctgaactgccactcctctaattaacatgcaaggaagataaaaatattatttaaagtgatac |
100 |
Q |
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| T |
7470661 |
ctctatcagaagtcgaacaccatgtggagaagctggatcctgaactgccactcctctaattaacatgcaaggaagataaaattattatttaaagtgatac |
7470760 |
T |
|
| Q |
101 |
taatgatcattttacaactgttttagaagagatacaattatgtttaatagaaatataaaagttagttagagtttgttattagggcgttacttcgttgatt |
200 |
Q |
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| T |
7470761 |
taatgatcattttacaactgttttagagaagatacaagtctgtttaatagaaatataaaagttggttaaagtttgttattagggcgttacttcgttgatt |
7470860 |
T |
|
| Q |
201 |
tgtagttattaccactgagaatcttagatggcacctcatgaacattnnnnnnntatgttttagatcaatatctttttnnnnnnntggaccgacccaagat |
300 |
Q |
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| T |
7470861 |
tgtagttattaccactgagaatcttagatggcacctcatgaatattaaaaaaatatgttttagatcaatatctttttaaaaaaatggaccgacccaagat |
7470960 |
T |
|
| Q |
301 |
gtatggttttgtaaggttacct |
322 |
Q |
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||| |||||||||||||||||| |
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| T |
7470961 |
gtacggttttgtaaggttacct |
7470982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 6331070 - 6331147
Alignment:
| Q |
1 |
ctctatcagaagtcgaacaccatgtggagaagctggatcctgaactgccactcctctaattaacatgcaaggaagata |
78 |
Q |
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|||||||||||| |||| |||||||| |||| |||||||| ||| |||||||||||| ||||| |||||||||||| |
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| T |
6331070 |
ctctatcagaaggcgaattccatgtggggaagttggatcctcaacagccactcctctagataacaagcaaggaagata |
6331147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 6351631 - 6351681
Alignment:
| Q |
83 |
tattatttaaagtgatactaatgatcattttacaactgttttagaagagat |
133 |
Q |
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| T |
6351631 |
tattaattaaagtgattttaatgatcattttacaactgttttagaggagat |
6351681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 6409409 - 6409485
Alignment:
| Q |
1 |
ctctatcagaagtcgaacaccatgtggagaagctggatcctgaactgccactcctctaattaacatgcaaggaagat |
77 |
Q |
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|||||||| ||| ||||||||||||||| | |||||||| ||| |||||||||||| ||||| ||||||||||| |
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| T |
6409409 |
ctctatcaaaaggcgaacaccatgtggaaattttggatccttaacagccactcctctagataacaagcaaggaagat |
6409485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 6320608 - 6320687
Alignment:
| Q |
1 |
ctctatcagaagtcgaacaccatgtggagaagctggatcctgaactgccactcctcta-at-taacatgcaaggaagata |
78 |
Q |
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|||||||||||| |||| |||||||| |||| |||||||| ||| |||||||||||| || || ||||||||||||||| |
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| T |
6320608 |
ctctatcagaaggcgaattccatgtggggaagttggatcctcaacagccactcctctagatatagcatgcaaggaagata |
6320687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 6390157 - 6390235
Alignment:
| Q |
1 |
ctctatcagaagtcgaacaccatgtggagaagctggatcctgaactgccactcctctaattaacatgcaaggaagataa |
79 |
Q |
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|||||||||||| || | |||||||||||| |||||||| ||| ||||| |||||| ||||| ||||||||||||| |
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| T |
6390157 |
ctctatcagaagacgcagaccatgtggagattttggatccttaacagccacacctctagataacaagcaaggaagataa |
6390235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 7328271 - 7328239
Alignment:
| Q |
145 |
taatagaaatataaaagttagttagagtttgtt |
177 |
Q |
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| T |
7328271 |
taatagaaatatagaagttagttagagtttgtt |
7328239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 46848968 - 46849012
Alignment:
| Q |
89 |
ttaaagtgatactaatgatcattttacaactgttttagaagagat |
133 |
Q |
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| T |
46848968 |
ttaaggtgaaactaataatcattttacaacttttttagaagagat |
46849012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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