View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14831_low_18 (Length: 248)

Name: NF14831_low_18
Description: NF14831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14831_low_18
NF14831_low_18
[»] chr7 (3 HSPs)
chr7 (138-231)||(25151117-25151210)
chr7 (10-84)||(25150988-25151062)
chr7 (145-230)||(25168191-25168276)


Alignment Details
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 25151117 - 25151210
Alignment:
Q  138 ctaaaatagcatgcactcaccaagatctgatatgtttcaaaatgcannnnnnngttaattgatccaagcaaggtttgaatcaattcacaacatt 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  25151117 ctaaaatagcatgcactcaccaagatctgatatgtttcaaaatgcatttttttgttaattgatccaagcaaggtttgaatcaattcacaacatt 25151210  T

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Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 25150988 - 25151062
Alignment:
Q  10 ttatgattgaaatccatcacgtttaactcatgggaatgagagaaaatcaatgtgtgattatttgataatcaaaaa 84  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25150988 ttatgattgaaatccatcacgtttaacttatgggaatgagagaaaatcaatgtgtgattatttgataatcaaaaa 25151062  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 25168276 - 25168191
Alignment:
Q  145 agcatgcactcaccaagatctgatatgtttcaaaatgcannnnnnngttaattgatccaagcaaggtttgaatcaattcacaacat 230  Q
    |||||||||||||||| |||| ||||||||| |||||||       ||||||| || ||| |||| | ||||||||||||||||||    
T  25168276 agcatgcactcaccaaaatctcatatgtttctaaatgcatttctttgttaattaattcaaacaagttgtgaatcaattcacaacat 25168191  T

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