View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14831_low_22 (Length: 217)

Name: NF14831_low_22
Description: NF14831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14831_low_22
NF14831_low_22
[»] chr5 (8 HSPs)
chr5 (16-200)||(10563601-10563785)
chr5 (38-200)||(10748488-10748650)
chr5 (30-187)||(10610297-10610454)
chr5 (51-172)||(10764618-10764739)
chr5 (41-190)||(7191589-7191738)
chr5 (23-109)||(10742157-10742243)
chr5 (49-125)||(10218230-10218306)
chr5 (45-166)||(10603361-10603482)
[»] chr6 (5 HSPs)
chr6 (16-174)||(12905790-12905948)
chr6 (16-174)||(12930879-12931037)
chr6 (23-174)||(12898168-12898320)
chr6 (26-174)||(12947244-12947392)
chr6 (16-174)||(12956681-12956839)
[»] chr2 (1 HSPs)
chr2 (16-174)||(17924854-17925012)


Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 10563785 - 10563601
Alignment:
Q  16 tattagaagctatcgaaagcatttctagtttactacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatcc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10563785 tattagaagctatcgaaagcatttctagtttactacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatcc 10563686  T
Q  116 aaaacttagccagtaaatatcttgtaacttctctagacttggaacttgtcccaccaaatagttttgagctaagtcgagtacttgt 200  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10563685 aaaacttagccagtaaagatcttgtaacttctctagacttggaacttgtcccaccaaatagttttgagctaagtcgagtacttgt 10563601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 38 - 200
Target Start/End: Original strand, 10748488 - 10748650
Alignment:
Q  38 ttctagtttactacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatccaaaacttagccagtaaatatct 137  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||| |||| ||||| | | ||| |||||||||||| ||||    
T  10748488 ttctagtttactacaatttgtcaaatactttaaaaactctaaatcgatagttgaattgttaccgaaatagttgtcttccaaatttagccagtaaagatct 10748587  T
Q  138 tgtaacttctctagacttggaacttgtcccaccaaatagttttgagctaagtcgagtacttgt 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||    
T  10748588 tgtaacttctctagacttggaacttgccccaccaaatagttttgagctaagtcaagtaattgt 10748650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 30 - 187
Target Start/End: Complemental strand, 10610454 - 10610297
Alignment:
Q  30 gaaagcatttctagtttactacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatccaaaacttagccagt 129  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||| |||| ||||||| | ||||| |||||||    
T  10610454 gaaagcttttctagtttactacagtttgtcaaatattttaaaaactctaaatctatagttgaattgttaccgaaatagttgtattccaaactcagccagt 10610355  T
Q  130 aaatatcttgtaacttctctagacttggaacttgtcccaccaaatagttttgagctaa 187  Q
    ||| |||| |||||||||||||||||||||||||||| ||||||| ||||||| ||||    
T  10610354 aaagatctggtaacttctctagacttggaacttgtccaaccaaattgttttgacctaa 10610297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 172
Target Start/End: Original strand, 10764618 - 10764739
Alignment:
Q  51 caatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatccaaaacttagccagtaaatatcttgtaacttctcta 150  Q
    |||||||||||||| ||||||||||||||||| ||  | ||||||| |||||||||||| | | | ||| ||||| ||  || || |||||| ||| |||    
T  10764618 caatttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaaattcccta 10764717  T
Q  151 gacttggaacttgtcccaccaa 172  Q
    |||||||||||||||| |||||    
T  10764718 gacttggaacttgtccaaccaa 10764739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 190
Target Start/End: Complemental strand, 7191738 - 7191589
Alignment:
Q  41 tagtttactacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatc-caaaacttagccagtaaatatcttg 139  Q
    |||||||||||| ||||||||  | |||||||||||||||||  || | ||||||||||||||| |||| || | | | | ||| ||    || ||| ||    
T  7191738 tagtttactacagtttgtcaaggattttaaaaactctaaatccttagtggaattgttacctaaactgtt-tagctctagatttaaccgtcgaagatcatg 7191640  T
Q  140 taacttctctagacttggaacttgtcccaccaaatagttttgagctaagtc 190  Q
    ||||||| ||||||||||||||||||| ||||||| ||||||| |||||||    
T  7191639 taacttccctagacttggaacttgtccgaccaaattgttttgatctaagtc 7191589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 10742157 - 10742243
Alignment:
Q  23 agctatcgaaagcatttctagtttactacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgtt 109  Q
    ||||||||||| || || || |||| ||||||||||||||||  ||||||||  |||||||||   |||||||||||||||||||||    
T  10742157 agctatcgaaaacaattttaatttagtacaatttgtcaaatatcttaaaaacattaaatctatggctgaattgttacctaaattgtt 10742243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 10218230 - 10218306
Alignment:
Q  49 tacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatccaaaacttagc 125  Q
    |||||||||||||| | ||||||||||| |||||  |  ||||||||| |||||||| ||||||| | |||||||||    
T  10218230 tacaatttgtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaacttagc 10218306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 166
Target Start/End: Complemental strand, 10603482 - 10603361
Alignment:
Q  45 ttactacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatccaaaacttagccagtaaatatcttgtaact 144  Q
    |||||||| ||||||||  | ||||||||||| ||||| ||  |||| |||| ||||||| ||||   | | ||| ||||| | |||| ||||| || ||    
T  10603482 ttactacagtttgtcaatgattttaaaaactccaaatcaattgttgagttgtcacctaaaatgttcatttccaaatttagcaaataaagatcttttagct 10603383  T
Q  145 tctctagacttggaacttgtcc 166  Q
    || |||||||||||||||||||    
T  10603382 tccctagacttggaacttgtcc 10603361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 2e-32; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 16 - 174
Target Start/End: Complemental strand, 12905948 - 12905790
Alignment:
Q  16 tattagaagctatcgaaagcatttctagtttactacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatcc 115  Q
    |||||||| |||| |||||||  | ||||||||| |||||||||||||| |||||||||||||||||  || ||||| ||||||||||||||||| ||||    
T  12905948 tattagaatctattgaaagcacgtatagtttactgcaatttgtcaaatattttaaaaactctaaatccttagttgaaatgttacctaaattgttgaatcc 12905849  T
Q  116 aaaacttagccagtaaatatcttgtaacttctctagacttggaacttgtcccaccaaat 174  Q
     ||||||||   | ||| || |||||| ||| ||||||||||||||||||| |||||||    
T  12905848 caaacttagaatggaaagattttgtaaattccctagacttggaacttgtccaaccaaat 12905790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 174
Target Start/End: Complemental strand, 12931037 - 12930879
Alignment:
Q  16 tattagaagctatcgaaagcatttctagtttactacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatcc 115  Q
    ||||| ||| |||||||||||  | ||||||||| |||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||   | |    
T  12931037 tattataagatatcgaaagcacgtatagtttactgcaatttgtcaaatattttaaaaactctaaatccatagttgaattgttacctaaattgttaacttc 12930938  T
Q  116 aaaacttagccagtaaatatcttgtaacttctctagacttggaacttgtcccaccaaat 174  Q
     ||||||||  || ||| ||||||||| |||   ||||||||||||||||| |||||||    
T  12930937 caaacttaggaaggaaagatcttgtaaattcctaagacttggaacttgtccaaccaaat 12930879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 23 - 174
Target Start/End: Complemental strand, 12898320 - 12898168
Alignment:
Q  23 agctatcgaaagcatttctagtttactacaatttgtcaaatagtttaaaaactct-aaatctataattgaattgttacctaaattgttgtatccaaaact 121  Q
    ||||||||||||||  | ||||||||| |||||||||||||| |||||||| ||| ||||| ||| ||||| ||||||||||||||||| |||| |||||    
T  12898320 agctatcgaaagcacatttagtttactgcaatttgtcaaatattttaaaaaatctaaaatccatagttgaaatgttacctaaattgttgaatcccaaact 12898221  T
Q  122 tagccagtaaatatcttgtaacttctctagacttggaacttgtcccaccaaat 174  Q
    |||   | ||| || |||||| ||| ||||||||||||||||||| |||||||    
T  12898220 tagaatggaaagattttgtaaattccctagacttggaacttgtccaaccaaat 12898168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 12947392 - 12947244
Alignment:
Q  26 tatcgaaagcatttctagtttactacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatccaaaacttagc 125  Q
    |||||||||||| | ||||||||| |||||||||||||| |||||||||||||| || ||| ||||| ||||||||||||||||  || | ||||||||     
T  12947392 tatcgaaagcatgtttagtttactgcaatttgtcaaatattttaaaaactctaagtccatagttgaaatgttacctaaattgttaaattccaaacttagg 12947293  T
Q  126 cagtaaatatcttgtaacttctctagacttggaacttgtcccaccaaat 174  Q
     || ||| ||||||||| |||   ||||||||||||||||| |||||||    
T  12947292 aaggaaagatcttgtaaattcctaagacttggaacttgtccaaccaaat 12947244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 174
Target Start/End: Complemental strand, 12956839 - 12956681
Alignment:
Q  16 tattagaagctatcgaaagcatttctagtttactacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatcc 115  Q
    ||||| ||| |||||||||| | | ||||||||| ||||| |||||||| |||| ||| |||||||| ||| ||||| ||||||||||||||||  ||      
T  12956839 tattataagatatcgaaagcttgtgtagtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattg 12956740  T
Q  116 aaaacttagccagtaaatatcttgtaacttctctagacttggaacttgtcccaccaaat 174  Q
     ||| ||||   | |||  |||||||| ||| ||||||||||||||||||| |||||||    
T  12956739 caaatttagattggaaaggtcttgtaaattccctagacttggaacttgtccaaccaaat 12956681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 174
Target Start/End: Original strand, 17924854 - 17925012
Alignment:
Q  16 tattagaagctatcgaaagcatttctagtttactacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatcc 115  Q
    ||||| ||| |||||||| | | | ||||||||| |||||||||||||| ||||||||||||||||| ||| ||||||| | |||||||||||| | | |    
T  17924854 tattataagatatcgaaaacttgtgtagtttactgcaatttgtcaaatattttaaaaactctaaatccatagttgaattatcacctaaattgttttcttc 17924953  T
Q  116 aaaacttagccagtaaatatcttgtaacttctctagacttggaacttgtcccaccaaat 174  Q
     ||| ||||   | |||  |||||||| ||| ||||||||||||||||||| |||||||    
T  17924954 caaatttagaatggaaaggtcttgtaaattccctagacttggaacttgtccaaccaaat 17925012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University