View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14831_low_24 (Length: 209)
Name: NF14831_low_24
Description: NF14831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14831_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 12924177 - 12924361
Alignment:
| Q |
11 |
tccaagaatatgaatgcaattataaaccttccatcaaaagactaatacaaattaagaacaaacaaaatcacctcaagtctaagaatggatattgtatcac |
110 |
Q |
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| T |
12924177 |
tccaagtatatgaatgcaattataaaccttccatcaaaagactaatacaaattaagaacaaacaaaatcacctcaagtctaagaacggatattgtatcac |
12924276 |
T |
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| Q |
111 |
ttgcacatcaatgaatagaaaatcaacctcagtgaaatggctcatgttggcaccagtctacaatcatcatcaggagtgaagaaaa |
195 |
Q |
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| T |
12924277 |
ttgcacatcaatgaatagaaaatcaacctcagtgaaatggctcatgttggcaccagtctacaatcatcatcaggagtgaagaaaa |
12924361 |
T |
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Target: chr1 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 34 - 124
Target Start/End: Complemental strand, 30791463 - 30791373
Alignment:
| Q |
34 |
aaaccttccatcaaaagactaatacaaattaagaacaaacaaaatcacctcaagtctaagaatggatattgtatcacttgcacatcaatga |
124 |
Q |
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| T |
30791463 |
aaaccttccatcaaaagactaatacaaattgagaacaaaccaaatcacctgaagtctaagaacagatattgtatcacttgcacatcaatga |
30791373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 195
Target Start/End: Complemental strand, 30791364 - 30791322
Alignment:
| Q |
153 |
catgttggcaccagtctacaatcatcatcaggagtgaagaaaa |
195 |
Q |
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| T |
30791364 |
catgttggcacaagtctacaatcatcatcaggagtgaagaaaa |
30791322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 22382395 - 22382461
Alignment:
| Q |
65 |
agaacaaacaaaatcacctcaagtctaagaatggatattgtatcacttgcacatcaatgaatagaaa |
131 |
Q |
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| T |
22382395 |
agaacaaaccaaatcacctcaagtctaagaacagatattgtatcacttgcacatcaatgtatagaaa |
22382461 |
T |
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