View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14831_low_3 (Length: 417)
Name: NF14831_low_3
Description: NF14831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14831_low_3 |
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| [»] scaffold0221 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 155 - 404
Target Start/End: Original strand, 15050220 - 15050469
Alignment:
| Q |
155 |
caaaatacttacttgtagataaattaaaactgaaatattctgctttagtgttatgaatcaatggaagctatgatggtaagcaaaaacagagttacatgag |
254 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15050220 |
caaaatacttacttgtaggtaaattaaaactgaaatactctgctttagtgctatgaatcaatggaagctatgatggtaagcaaaaacagagttacatgag |
15050319 |
T |
|
| Q |
255 |
aatgaatatgagacctgattcaaagagacaagagcgtgaaaaagagaacgatgaccctatatcacaacaattgagattgaatttcaatcagattctttga |
354 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
15050320 |
aatgaatatgagacctgattcaaagagacaagagcgtgaaaaagagaacgacgaccttatatcacaacaattgagattgaatgtcaatcagattctttga |
15050419 |
T |
|
| Q |
355 |
ttagcgggaaagaggagataattgcggcgggagtggtgaacgtgggttct |
404 |
Q |
| |
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||||||| ||||| ||||||||||| |||||||||||||||||||||||| |
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|
| T |
15050420 |
ttagcggaaaagatgagataattgctgcgggagtggtgaacgtgggttct |
15050469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 184 - 296
Target Start/End: Original strand, 15231062 - 15231171
Alignment:
| Q |
184 |
ctgaaatattctgctttagtgttatgaatcaatggaagctatgatggtaagcaaaaacagagttacatgagaatgaatatgagacctgattcaaagagac |
283 |
Q |
| |
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|||||||| |||||||||||| |||||||||||||||||| |||| ||||||| ||||||||| |||| ||||||||||||||||| ||| | || | |
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| T |
15231062 |
ctgaaatactctgctttagtgctatgaatcaatggaagctgtgattctaagcaagaacagagtt--gtgaggatgaatatgagacctgactcaca-aggc |
15231158 |
T |
|
| Q |
284 |
aagagcgtgaaaa |
296 |
Q |
| |
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||||||||||||| |
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| T |
15231159 |
aagagcgtgaaaa |
15231171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 155 - 404
Target Start/End: Original strand, 20789668 - 20789915
Alignment:
| Q |
155 |
caaaatacttacttgtagataaattaaaactgaaatattctgctttagtgttatgaatcaatggaagctatgatggtaagcaaaaacagagttacatgag |
254 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20789668 |
caaaatacttacttgtaggtaaattaaaactgaaatactctgcttgagtgctatgaatcaatggaagctatgatggtaagcaaaaacagagttacatgag |
20789767 |
T |
|
| Q |
255 |
aatgaatatgagacctgattcaaagagacaagagcgtgaaaaagagaacgatgaccctatatcacaacaattgagattgaatttcaatcagattctttga |
354 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
20789768 |
aatgaatatgagacctgattcaaagagac--gagcgtgaaaaagagagcgacgaccctatatcacaacaattgagattgaatgtcaatcagattctttga |
20789865 |
T |
|
| Q |
355 |
ttagcgggaaagaggagataattgcggcgggagtggtgaacgtgggttct |
404 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
20789866 |
ttagcggaaaagaggagataattgcagcgggagtggtgaacgtgggttct |
20789915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 155 - 267
Target Start/End: Original strand, 24187389 - 24187501
Alignment:
| Q |
155 |
caaaatacttacttgtagat-aaattaaaactgaaatattctgctttagtgttatgaatcaatggaagctatgatggtaagcaaaaacagagttacatga |
253 |
Q |
| |
|
||||||||||||||||| | |||| ||| |||||||| |||||||||| | ||||||||||||||||||||||| ||||||| ||||||||||| ||| |
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| T |
24187389 |
caaaatacttacttgtaagtgaaatgaaatctgaaatactctgctttag-gctatgaatcaatggaagctatgatagtaagcagaaacagagttatgtga |
24187487 |
T |
|
| Q |
254 |
gaatgaatatgaga |
267 |
Q |
| |
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| |||||||||||| |
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|
| T |
24187488 |
ggatgaatatgaga |
24187501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 9e-46; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 155 - 399
Target Start/End: Original strand, 1183442 - 1183690
Alignment:
| Q |
155 |
caaaatacttacttgtagataaattaaaactgaaatattctgctttagtgttatgaatcaatggaagctatgatggtaagcaaaaacagagttacatgag |
254 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| | |||||||||| |||||||||||||||| | ||||| |||||| ||||||||||| |||| |
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|
| T |
1183442 |
caaaatacttacttgtaagtaaattaaaactgaaatactatgctttagtgctatgaatcaatggaagttgtgatgataagcagaaacagagttatgtgag |
1183541 |
T |
|
| Q |
255 |
aatgaatatgagacctgattcaaagagacaagagcgtgaaaaagaga-----acgatgaccctatatcacaacaattgagattgaatttcaatcagattc |
349 |
Q |
| |
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|||||||| | | |||||||| | || ||||||| |||||| |||| |||| ||| |||| ||||||||| ||| |||||||||||||||| || |
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| T |
1183542 |
gatgaatataaaatctgattcaca-aggcaagagcatgaaaacgagaaatcgacgacgacactatttcacaacaaatgaagttgaatttcaatcagagtc |
1183640 |
T |
|
| Q |
350 |
tttgattagcgggaaagaggagataattgcggcgggagtggtgaacgtgg |
399 |
Q |
| |
|
||||||| | ||||||||||| | ||||| |||||||||||| ||||||| |
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|
| T |
1183641 |
tttgattcgtgggaaagaggaaacaattgtggcgggagtggttaacgtgg |
1183690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 48466498 - 48466663
Alignment:
| Q |
1 |
aatgcaaacaaaacaaaaacacatagcacggttctctatacaatgtaatacctttgtaacaaatattaccaaataaacactgctgattcacgctacatgg |
100 |
Q |
| |
|
|||||| |||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||| || |||||||| ||| ||||||||| ||| |||| |
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| T |
48466498 |
aatgcagacaaaacaaaaacacagtgcatggttctctaaacaatgtaatacctttgtaacaaataatatcaaataaaaacttctgattcacactatatgg |
48466597 |
T |
|
| Q |
101 |
at-------tcagaattatagtttaccaaaagtagcaaaaatcaaaacaaatacaagtaaccaaaa |
159 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
48466598 |
attcagaaatcagaattacagtttaccaaaagtagcaaaaatcaaaacaaatacaagttaccaaaa |
48466663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 394
Target Start/End: Original strand, 54593376 - 54593450
Alignment:
| Q |
319 |
caacaattgagattgaatttcaatcagattctttgattagcgggaaagaggagataattgcggcgggagtggtgaa |
394 |
Q |
| |
|
|||||| || ||||||||| | ||||||| |||||||| ||||||||||||| ||| ||| |||||||||| |||| |
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|
| T |
54593376 |
caacaaatgtgattgaattcctatcagat-ctttgatttgcgggaaagaggaaatagttgtggcgggagtgatgaa |
54593450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 157 - 399
Target Start/End: Complemental strand, 49959611 - 49959364
Alignment:
| Q |
157 |
aaatacttacttgtagataaattaaaactgaaatattctgctttagtgttatgaatcaatggaagctatgatggtaagcaaaaacagagttacatgagaa |
256 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||| | ||||| |||||| ||||||||||| |||| | |
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|
| T |
49959611 |
aaatacttacttgtaagtaaattaaaactgaaatactctgctttagtgctatgaatcaatggaagttgtgatgataagcagaaacagagttatgtgagga |
49959512 |
T |
|
| Q |
257 |
tgaatatgagacctgattcaaagagacaagagcgtgaaaaagagaa--cgat---gaccctatatcacaacaattgagattgaatttcaatcagattctt |
351 |
Q |
| |
|
|| |||||| | |||||| | |||| ||||||| |||||| ||||| |||| ||| |||| |||||||||| || |||||| |||| |||| |||| |
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|
| T |
49959511 |
tgcatatgaaatctgatttacagaggcaagagcatgaaaacgagaaatcgatgacgacactatttcacaacaatagaagttgaatatcaaccagagtctt |
49959412 |
T |
|
| Q |
352 |
tgattagcgggaaagaggagataattgcggcgggagtggtgaacgtgg |
399 |
Q |
| |
|
|| || | ||||||||||| | |||||||| || |||||| ||||||| |
|
|
| T |
49959411 |
tgtttcgtgggaaagaggaaacaattgcggtggaagtggttaacgtgg |
49959364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 155 - 267
Target Start/End: Original strand, 412985 - 413097
Alignment:
| Q |
155 |
caaaatacttacttgtagat-aaattaaaactgaaatattctgctttagtgttatgaatcaatggaagctatgatggtaagcaaaaacagagttacatga |
253 |
Q |
| |
|
||||||||||||||||| | |||| ||| |||||||| |||||||||| | ||||||||||||||||||||||| ||||||| ||||||||||| ||| |
|
|
| T |
412985 |
caaaatacttacttgtaagtgaaatgaaatctgaaatactctgctttag-gctatgaatcaatggaagctatgatagtaagcagaaacagagttatgtga |
413083 |
T |
|
| Q |
254 |
gaatgaatatgaga |
267 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
413084 |
ggatgaatatgaga |
413097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 155 - 267
Target Start/End: Complemental strand, 24342515 - 24342403
Alignment:
| Q |
155 |
caaaatacttacttgtagat-aaattaaaactgaaatattctgctttagtgttatgaatcaatggaagctatgatggtaagcaaaaacagagttacatga |
253 |
Q |
| |
|
||||||||||||||||| | |||| ||| |||||||| |||||||||| | ||||||||||||||||||||||| ||||||| ||||||||||| ||| |
|
|
| T |
24342515 |
caaaatacttacttgtaagtgaaatgaaatctgaaatactctgctttag-gctatgaatcaatggaagctatgatagtaagcagaaacagagttatgtga |
24342417 |
T |
|
| Q |
254 |
gaatgaatatgaga |
267 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
24342416 |
ggatgaatatgaga |
24342403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 155 - 248
Target Start/End: Complemental strand, 24354893 - 24354800
Alignment:
| Q |
155 |
caaaatacttacttgtagat-aaattaaaactgaaatattctgctttagtgttatgaatcaatggaagctatgatggtaagcaaaaacagagtta |
248 |
Q |
| |
|
||||||||||||||||| | |||| ||| |||||||| |||||||||| | ||||||||||||||||||||||| ||||||| ||||| ||||| |
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|
| T |
24354893 |
caaaatacttacttgtaagtgaaatgaaatctgaaatactctgctttag-gctatgaatcaatggaagctatgatagtaagcagaaacatagtta |
24354800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 10434 - 10377
Alignment:
| Q |
175 |
aaattaaaactgaaatattctgctttagtgttatgaatcaatggaagctatgatggta |
232 |
Q |
| |
|
|||||| |||||| ||| ||||||||| || |||||||||||||||||||| |||||| |
|
|
| T |
10434 |
aaattataactgatatactctgctttaatgctatgaatcaatggaagctataatggta |
10377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 274
Target Start/End: Original strand, 12102406 - 12102476
Alignment:
| Q |
204 |
gttatgaatcaatggaagctatgatggtaagcaaaaacagagttacatgagaatgaatatgagacctgatt |
274 |
Q |
| |
|
|||||||||||||||||||| ||||| || | | ||||||||||| |||| |||||| ||||||||||| |
|
|
| T |
12102406 |
gttatgaatcaatggaagctgtgatgataggaagaaacagagttatgtgaggatgaatcagagacctgatt |
12102476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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