View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14831_low_5 (Length: 379)

Name: NF14831_low_5
Description: NF14831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14831_low_5
NF14831_low_5
[»] chr6 (2 HSPs)
chr6 (16-364)||(9411808-9412156)
chr6 (70-117)||(6596310-6596357)
[»] chr1 (5 HSPs)
chr1 (16-362)||(7554877-7555230)
chr1 (62-111)||(9581627-9581676)
chr1 (149-282)||(9587021-9587154)
chr1 (62-111)||(9587198-9587247)
chr1 (83-116)||(52094092-52094125)
[»] chr5 (4 HSPs)
chr5 (176-287)||(28673460-28673571)
chr5 (166-287)||(28695700-28695821)
chr5 (168-263)||(41886774-41886869)
chr5 (167-287)||(29021555-29021675)
[»] chr4 (8 HSPs)
chr4 (173-362)||(8186543-8186732)
chr4 (169-283)||(532582-532696)
chr4 (69-122)||(1755479-1755532)
chr4 (167-238)||(1481561-1481632)
chr4 (201-290)||(1755308-1755397)
chr4 (83-132)||(2373565-2373614)
chr4 (57-122)||(7225225-7225290)
chr4 (76-120)||(659977-660021)
[»] chr8 (4 HSPs)
chr8 (184-362)||(18314832-18315010)
chr8 (82-122)||(18314728-18314768)
chr8 (73-122)||(32151894-32151943)
chr8 (82-122)||(14004069-14004109)
[»] chr3 (1 HSPs)
chr3 (80-122)||(51763487-51763529)
[»] chr7 (1 HSPs)
chr7 (77-122)||(7977799-7977844)


Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 16 - 364
Target Start/End: Complemental strand, 9412156 - 9411808
Alignment:
Q  16 aatattacaactttaacctcattcacttgctcaagaatgggttctatcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaagaac 115  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9412156 aatattacaactttaacctcattcacttcctcaagaatgggttctatcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaagaac 9412057  T
Q  116 tcgacctgtgttatccccgtaaatttaaggatcatagctttcttaatagggtagagactctttcattgacacttttcaaactcaccaagattaatctctc 215  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9412056 tcaacctgtgttatccccgtaaatttaaggatcatagctttcttaatagggtagagactctttcattgacacttttcaaactcaccaagattaatctctc 9411957  T
Q  216 tggtcatcactacatcaacgacacatcactcttcaacttgtttaagaactgtaaacttctcgaagaggttatcatgtttcgctgtcgtagcataaccaaa 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  9411956 tggtcatcactacatcaacgacacatcactcttcaacttgtttaagaactgtaagcttctccaagaggttatcatgtttcgctgtcgtagcataaccaaa 9411857  T
Q  316 gttggcattgtttctgctctctgtgagagaccaaccttgaggtctttgt 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9411856 gttggcattgtttctgctctctgtgagagaccaaccttgaggtctttgt 9411808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 117
Target Start/End: Original strand, 6596310 - 6596357
Alignment:
Q  70 aatgacttgttactcattgctgaatgtttccctttgcttgaagaactc 117  Q
    ||||||||||||||||||||||| |||||||| |||||  ||||||||    
T  6596310 aatgacttgttactcattgctgattgtttcccattgctcaaagaactc 6596357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 166; Significance: 9e-89; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 16 - 362
Target Start/End: Complemental strand, 7555230 - 7554877
Alignment:
Q  16 aatattacaactttaacctcattcacttgctcaagaatgggttctatcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaagaac 115  Q
    ||||||||||||||||||||| ||||||| || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7555230 aatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgctcgaagaac 7555131  T
Q  116 tcgacctgtgttatccccg---taaatttaaggatcatag---ctttcttaatagggtagagactctttcattgacacttttcaaactcaccaagattaa 209  Q
    || ||||| ||||||||||   ||||||||||||||||||   ||| |||||| || | ||||||||||||||| |||||| ||||||||||| ||||||    
T  7555130 tcaacctgggttatccccgtaataaatttaaggatcatagtaacttccttaatgggttggagactctttcattggcactttccaaactcaccaggattaa 7555031  T
Q  210 tctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaactgtaaacttctcgaagaggttatcatgtttcgctgtcgtagcata 309  Q
    ||||||||  ||| ||||||||||||||| ||||||  |  |||||||||||||||| || |||||| |||||||||||||||||   |||  | |||||    
T  7555030 tctctctgaccattactacatcaacgacatatcacttgttcacttgtttaagaactgcaagcttctccaagaggttatcatgtttgagtgtgatggcata 7554931  T
Q  310 accaaagttggca-ttgtttctgctctctgtgagagaccaaccttgaggtcttt 362  Q
    ||||||| ||||| || |||| ||||||  |||||||||||| |||||||||||    
T  7554930 accaaagctggcatttttttcagctctccatgagagaccaacattgaggtcttt 7554877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 9581676 - 9581627
Alignment:
Q  62 tcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaa 111  Q
    ||||||| ||||||||||| |||||||| |||||||| ||||| ||||||    
T  9581676 tcaatagtaatgacttgttcctcattgccgaatgttttcctttacttgaa 9581627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 282
Target Start/End: Complemental strand, 9587154 - 9587021
Alignment:
Q  149 atagctttcttaatagggtagagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactctt 248  Q
    ||||||||||  || |||| ||||||||||| ||  ||||||||| ||||  ||| |||||||||||||||||   |||| ||||| ||  ||| || ||    
T  9587154 atagctttctccatggggttgagactctttcgttagcacttttcagactccgcaaaattaatctctctggtcagagctacctcaacaaccaatcgctttt 9587055  T
Q  249 caacttgtttaagaactgtaaacttctcgaagag 282  Q
    | ||||||| || || ||||| ||||| ||||||    
T  9587054 ccacttgttcaaaaattgtaatcttcttgaagag 9587021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 9587247 - 9587198
Alignment:
Q  62 tcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaa 111  Q
    ||||||| ||||||||||| ||||||||  ||||||||||||| ||||||    
T  9587247 tcaatagtaatgacttgttcctcattgccaaatgtttccctttacttgaa 9587198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 52094125 - 52094092
Alignment:
Q  83 tcattgctgaatgtttccctttgcttgaagaact 116  Q
    |||||||||||||||||||||| |||||||||||    
T  52094125 tcattgctgaatgtttccctttccttgaagaact 52094092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 176 - 287
Target Start/End: Original strand, 28673460 - 28673571
Alignment:
Q  176 tttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaactgtaaacttct 275  Q
    |||||||| ||||||||||||||  |||| |||||||||||  |||||||||||||||||||  |||||| ||| | ||| | || |||||||| |||||    
T  28673460 tttcattgccacttttcaaactctgcaaggttaatctctctcatcatcactacatcaacgaccaatcacttttccatttgataaacaactgtaagcttct 28673559  T
Q  276 cgaagaggttat 287  Q
    ||||||||||||    
T  28673560 cgaagaggttat 28673571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 166 - 287
Target Start/End: Original strand, 28695700 - 28695821
Alignment:
Q  166 gtagagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaact 265  Q
    |||||| || |||||||| ||||||||||||||  |||| ||||||||||| |||||||||||||||||| |  | |||| ||| ||||| | || ||||    
T  28695700 gtagaggctatttcattgccacttttcaaactctgcaaggttaatctctctcgtcatcactacatcaacggccaaccacttttccacttgataaacaact 28695799  T
Q  266 gtaaacttctcgaagaggttat 287  Q
    | || |||||||||||||||||    
T  28695800 gcaagcttctcgaagaggttat 28695821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 263
Target Start/End: Original strand, 41886774 - 41886869
Alignment:
Q  168 agagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaa 263  Q
    |||| |||||||| || |||||||||||||    ||| ||||||||||| ||||||||||||||||||| | ||  || ||| |||||||||||||    
T  41886774 agagcctctttcactggcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgtttaagaa 41886869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 287
Target Start/End: Complemental strand, 29021675 - 29021555
Alignment:
Q  167 tagagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaactg 266  Q
    ||||| || |||||||| ||||||| ||||||  |||| || |||||||| |||||  ||| |||||||||  |||||| ||| ||||  | || |||||    
T  29021675 tagaggctatttcattgtcactttttaaactccgcaaggttgatctctctcgtcattgctatatcaacgaccaatcacttttccactttataaacaactg 29021576  T
Q  267 taaacttctcgaagaggttat 287  Q
    ||| ||||||||||| |||||    
T  29021575 taagcttctcgaagaagttat 29021555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 173 - 362
Target Start/End: Original strand, 8186543 - 8186732
Alignment:
Q  173 ctctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaactgtaaact 272  Q
    ||||||||||| |||||||||||||   |||| ||||||| |||  |||| |||| |||||||||| ||  || ||  ||||||| ||||| ||||| |     
T  8186543 ctctttcattggcacttttcaaacttcgcaaggttaatctatctaatcataactatatcaacgacaaattgctttttcacttgttaaagaattgtaagca 8186642  T
Q  273 tctcgaagaggttatcatgtttcgctgtcgtagcataaccaaagttggcattgtttctgctctctgtgagagaccaaccttgaggtcttt 362  Q
    ||||||||||||||||||||||   |||  |    |||||||||  ||||||| |||||| || || ||||||||||| |||||||||||    
T  8186643 tctcgaagaggttatcatgtttaagtgttctcagttaaccaaagcaggcattgcttctgccctatgggagagaccaacgttgaggtcttt 8186732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 283
Target Start/End: Complemental strand, 532696 - 532582
Alignment:
Q  169 gagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaactgta 268  Q
    ||||||||||||||  ||||||||||||||  |||| ||||||| |||  |||| ||||||||||||||  ||| || ||| ||||||| || || ||||    
T  532696 gagactctttcattatcacttttcaaactccgcaaggttaatctttctactcatgactacatcaacgaccaatcgcttttccacttgttcaaaaattgta 532597  T
Q  269 aacttctcgaagagg 283  Q
    | |||||||| ||||    
T  532596 agcttctcgaggagg 532582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 1755532 - 1755479
Alignment:
Q  69 caatgacttgttactcattgctgaatgtttccctttgcttgaagaactcgacct 122  Q
    ||||||||| || ||||||||||| |||||||||||||||||||||||| ||||    
T  1755532 caatgacttcttcctcattgctgactgtttccctttgcttgaagaactcaacct 1755479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 238
Target Start/End: Complemental strand, 1481632 - 1481561
Alignment:
Q  167 tagagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgaca 238  Q
    ||||| ||||||||||| |||| |||||||||  |||| |||||||||||| |||| ||||| |||||||||    
T  1481632 tagaggctctttcattggcactcttcaaactccgcaagcttaatctctctgatcattactacgtcaacgaca 1481561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 290
Target Start/End: Complemental strand, 1755397 - 1755308
Alignment:
Q  201 caagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaactgtaaacttctcgaagaggttatcat 290  Q
    ||||||||||||||||  ||||| | |||| ||| ||  |||||| ||   |||||| | |||||||||||||||||||||||| |||||    
T  1755397 caagattaatctctcttttcatcgccacataaacaaccgatcactttttcgcttgttcaggaactgtaaacttctcgaagaggtcatcat 1755308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 2373565 - 2373614
Alignment:
Q  83 tcattgctgaatgtttccctttgcttgaagaactcgacctgtgttatccc 132  Q
    |||||||||| |||||||||||||| |||||||| ||| || ||||||||    
T  2373565 tcattgctgattgtttccctttgctcgaagaacttgacttgagttatccc 2373614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 7225225 - 7225290
Alignment:
Q  57 ttctatcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaagaactcgacct 122  Q
    |||| ||| ||||| |||| |||| ||||| || || |||||||||||||| ||||||||||||||    
T  7225225 ttctgtcactagcactgacatgttcctcatcgcggattgtttccctttgctcgaagaactcgacct 7225290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 660021 - 659977
Alignment:
Q  76 ttgttactcattgctgaatgtttccctttgcttgaagaactcgac 120  Q
    ||||| ||||| ||||| ||||||||||||||||| |||||||||    
T  660021 ttgtttctcatagctgattgtttccctttgcttgacgaactcgac 659977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 362
Target Start/End: Original strand, 18314832 - 18315010
Alignment:
Q  184 acacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaactgtaaacttctcgaagagg 283  Q
    |||||||||||||||   ||| ||||| || ||| |||| |||||||||||||   ||| || ||| ||||||| ||||||||||| ||||||||||||     
T  18314832 acacttttcaaactccgaaaggttaatttcgctgatcattactacatcaacgatcaatcgcttttccacttgttcaagaactgtaagcttctcgaagaga 18314931  T
Q  284 ttatcatgtttcgctgtcgtagcataaccaaagttggcattgtttctgctctctgtgagagaccaaccttgaggtcttt 362  Q
      ||||| |||  ||||| |   |||||||| |  || |||| || ||||||| ||||||||||||| |||||||||||    
T  18314932 caatcatattttactgtcatcaaataaccaacgcgggtattgcttttgctctccgtgagagaccaactttgaggtcttt 18315010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 18314728 - 18314768
Alignment:
Q  82 ctcattgctgaatgtttccctttgcttgaagaactcgacct 122  Q
    ||||||||||| |||||||||||||| ||||||||||||||    
T  18314728 ctcattgctgattgtttccctttgctcgaagaactcgacct 18314768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 32151943 - 32151894
Alignment:
Q  73 gacttgttactcattgctgaatgtttccctttgcttgaagaactcgacct 122  Q
    |||||||| |||||||| || |||||||||||||| |||||||| |||||    
T  32151943 gacttgttcctcattgccgattgtttccctttgctcgaagaacttgacct 32151894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 14004109 - 14004069
Alignment:
Q  82 ctcattgctgaatgtttccctttgcttgaagaactcgacct 122  Q
    ||||||||||| ||||| |||||||| ||||||||||||||    
T  14004109 ctcattgctgattgttttcctttgctagaagaactcgacct 14004069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 51763487 - 51763529
Alignment:
Q  80 tactcattgctgaatgtttccctttgcttgaagaactcgacct 122  Q
    |||||||||| ||||||||||| ||||| ||||||||||||||    
T  51763487 tactcattgcggaatgtttcccattgctcgaagaactcgacct 51763529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 7977844 - 7977799
Alignment:
Q  77 tgttactcattgctgaatgtttccctttgcttgaagaactcgacct 122  Q
    |||| ||||| || || |||||||||||||||||||||||||||||    
T  7977844 tgtttctcatagcagattgtttccctttgcttgaagaactcgacct 7977799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University