View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14831_low_7 (Length: 359)

Name: NF14831_low_7
Description: NF14831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14831_low_7
NF14831_low_7
[»] chr4 (1 HSPs)
chr4 (1-343)||(26631904-26632246)
[»] chr3 (1 HSPs)
chr3 (1-105)||(22518013-22518117)
[»] chr2 (3 HSPs)
chr2 (60-128)||(17556510-17556578)
chr2 (229-272)||(24186203-24186246)
chr2 (230-281)||(30272333-30272384)
[»] chr1 (3 HSPs)
chr1 (6-70)||(45676386-45676450)
chr1 (229-273)||(19281289-19281333)
chr1 (230-281)||(14993351-14993402)
[»] scaffold0664 (1 HSPs)
scaffold0664 (229-273)||(8424-8468)
[»] scaffold0126 (1 HSPs)
scaffold0126 (229-273)||(38343-38387)
[»] chr7 (1 HSPs)
chr7 (229-273)||(10012204-10012248)
[»] chr6 (1 HSPs)
chr6 (6-70)||(5750092-5750156)
[»] chr5 (1 HSPs)
chr5 (230-281)||(8026941-8026992)


Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 26631904 - 26632246
Alignment:
Q  1 tgttagctgaaccatctgtgttgcatttaatctattgaaagataaggggatgccataagacttcaatgattcttggagttttgggaggatgaatgcaaac 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26631904 tgttagctgaaccatctgtgttgcatttaatccattgaaagataaggggatgccataagacttcaatgattcttggagttttgggaggatgaatgcaaac 26632003  T
Q  101 attgatctttttaaggatggtaaagtcttggattgatgaggaagctactgcattggataggttacctgagagggacaaattagagataatcattgaaatt 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26632004 attgagctttttaaggatggtaaagtcttggattgatgaggaagctactgcattggataggttacctgagagggacaaattagagataatcattgaaatt 26632103  T
Q  201 gttgtttccagggaatctgcttaactttgaatcttatttggtttcttgaaaaccaaataatattaaggatattgatcaaggttgagattatagccaattt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26632104 gttgtttccagggaatctgcttaactttgaatcttatttggtttcttgaaaaccaaataatattaaggatattgatcaaggttgagattatagtcaattt 26632203  T
Q  301 acattgaggattccagtttctatcagcaagagaccatatgtct 343  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  26632204 acattgaggattccagtttctatcagcaagagaccatatgtct 26632246  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 22518013 - 22518117
Alignment:
Q  1 tgttagctgaaccatctgtgttgcatttaatctattgaaagataaggggatgccataagacttcaatgattcttggagttttgggaggatgaatgcaaac 100  Q
    |||||||||| |||| |||||| ||||| ||| | |  ||| |  ||||||| || | ||||||||||||||| || | |||||||||||||||||||||    
T  22518013 tgttagctgatccatttgtgttacatttgatccactagaagcttgggggatggcaaatgacttcaatgattctaggggctttgggaggatgaatgcaaac 22518112  T
Q  101 attga 105  Q
    |||||    
T  22518113 attga 22518117  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 17556510 - 17556578
Alignment:
Q  60 acttcaatgattcttggagttttgggaggatgaatgcaaacattgatctttttaaggatggtaaagtct 128  Q
    |||||||||||  | || ||||||||||| |||||||||||||||| |||||| |||||||| ||||||    
T  17556510 acttcaatgatcttaggggttttgggagggtgaatgcaaacattgagctttttgaggatggtgaagtct 17556578  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 272
Target Start/End: Original strand, 24186203 - 24186246
Alignment:
Q  229 gaatcttatttggtttcttgaaaaccaaataatattaaggatat 272  Q
    |||||||||||||||||||  |||||||||| ||||||||||||    
T  24186203 gaatcttatttggtttcttctaaaccaaatagtattaaggatat 24186246  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 281
Target Start/End: Original strand, 30272333 - 30272384
Alignment:
Q  230 aatcttatttggtttcttgaaaaccaaataatattaaggatattgatcaagg 281  Q
    ||||||||||||||||||| |||||||||  |||||| |||||| |||||||    
T  30272333 aatcttatttggtttcttgcaaaccaaatgctattaaagatattaatcaagg 30272384  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 45676450 - 45676386
Alignment:
Q  6 gctgaaccatctgtgttgcatttaatctattgaaagataaggggatgccataagacttcaatgat 70  Q
    |||| |||||||||||| ||||||||| | | ||||||| | |||||||||||||||||||||||    
T  45676450 gctgcaccatctgtgttacatttaatccagtcaaagataggtggatgccataagacttcaatgat 45676386  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 19281289 - 19281333
Alignment:
Q  229 gaatcttatttggtttcttgaaaaccaaataatattaaggatatt 273  Q
    ||||||||||||||||||| | ||||||||||||||||| |||||    
T  19281289 gaatcttatttggtttcttcagaaccaaataatattaagaatatt 19281333  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 281
Target Start/End: Original strand, 14993351 - 14993402
Alignment:
Q  230 aatcttatttggtttcttgaaaaccaaataatattaaggatattgatcaagg 281  Q
    ||||||||||||||||||| |||||||||  |||||| |||||| |||||||    
T  14993351 aatcttatttggtttcttgcaaaccaaatgctattaaagatattaatcaagg 14993402  T

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Target: scaffold0664 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 8468 - 8424
Alignment:
Q  229 gaatcttatttggtttcttgaaaaccaaataatattaaggatatt 273  Q
    |||||||||||||||||||  |||||||||| |||||||||||||    
T  8468 gaatcttatttggtttcttctaaaccaaatagtattaaggatatt 8424  T

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Target: scaffold0126 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 38387 - 38343
Alignment:
Q  229 gaatcttatttggtttcttgaaaaccaaataatattaaggatatt 273  Q
    |||||||||||||||||||  |||||||||| |||||||||||||    
T  38387 gaatcttatttggtttcttctaaaccaaatagtattaaggatatt 38343  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 10012248 - 10012204
Alignment:
Q  229 gaatcttatttggtttcttgaaaaccaaataatattaaggatatt 273  Q
    |||||||||||||||||||  |||||||||| |||||||||||||    
T  10012248 gaatcttatttggtttcttctaaaccaaatagtattaaggatatt 10012204  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 5750156 - 5750092
Alignment:
Q  6 gctgaaccatctgtgttgcatttaatctattgaaagataaggggatgccataagacttcaatgat 70  Q
    |||| |||||||||||| ||||||||| | | ||| ||| | |||||||||||||||||||||||    
T  5750156 gctgcaccatctgtgttacatttaatccagtcaaatataggtggatgccataagacttcaatgat 5750092  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 8026992 - 8026941
Alignment:
Q  230 aatcttatttggtttcttgaaaaccaaataatattaaggatattgatcaagg 281  Q
    ||||||||||||||||||| |||||||||  |||||| |||||| |||||||    
T  8026992 aatcttatttggtttcttgcaaaccaaatgctattaaagatattaatcaagg 8026941  T

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