View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14831_low_8 (Length: 352)
Name: NF14831_low_8
Description: NF14831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14831_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 29564110 - 29564442
Alignment:
| Q |
1 |
gaaggaaggtgtatgtagtaataataaatggaagaagcggtactaagtactaggcgtggaacctcgtgaagaggaagaacagagattttgaaatgacaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29564110 |
gaaggaaggtgtatgtagtaataataaatggaagaagcggtactaagtactaggcgtgcaacctcgtgaagaggaagaacagagattttgaaatgacaat |
29564209 |
T |
|
| Q |
101 |
aataacaacaacgttagacactgtgcnnnnnnngtgactgttatttatttcccaacgtcgagcactgcctcttcatgggaatttgaaaaagacttgtctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29564210 |
aataacaacaacgttagacactgtgctttttgtgtgactgttatttatttcccaacgtcgagcactgcctcttcatgggaatttgaaaaagacttgtctg |
29564309 |
T |
|
| Q |
201 |
gnnnnnnnnnnnnnnnnnnnnnnnacccaatatgccattcattggtcaaccataaatta-tattttaaatttagt---taatcattttcactttatttca |
296 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
29564310 |
gtttttgtttttgtttgtctttttacccaatatgccattcattggtcaaccataaattattattttaaatttagttaataatcattttcactttatttca |
29564409 |
T |
|
| Q |
297 |
ttctattttggtttacacttagttctacattat |
329 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
29564410 |
ttctattttggtttacacttagttgtacattat |
29564442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University