View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14832_low_1 (Length: 613)
Name: NF14832_low_1
Description: NF14832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14832_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 1 - 598
Target Start/End: Complemental strand, 47123978 - 47123381
Alignment:
| Q |
1 |
ttctgtcaaagagtcccgcaaacagaccacgtgttctcctcaagtgtatttttgaagagcagtgtggttttattgcagttcggtcgattctaaacaatgt |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47123978 |
ttctttcaaagagtcccgcaaacagaccacgtgttctcttcaagtgtatttttgaagagcagtgtggttttattgcagttcggtcgattctaaacaatgt |
47123879 |
T |
|
| Q |
101 |
cttgatagctttagaggttgtccgtttcttgaaattcaaaactcgaggaaagttttaggaagttgctctaaaattgatattaataatagcaaagcttatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47123878 |
cttgatagctttagaggttgtccgtttcttgaaattcaaaactcgaggaaagttttaggaagttgctctaaaattgatattaataatagcaaagcttatg |
47123779 |
T |
|
| Q |
201 |
tagattggagatatctcttcactatcttggaagaaaagggttttaaacaaaaatggataggctcgatgcggacttgtgttacttcggtgaaggtttatct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
47123778 |
tagattggagatatctcttcactatcttggaagaaaagggttttaaacaaaaatggataggctcgatgcggactcgtgttacttcggtgaaggtttatct |
47123679 |
T |
|
| Q |
301 |
ttttattctttgtactgaaattttatctgttttattacactaggctcaactgcagagcattatccatggagtcaatgtgtgtcatgaagctaaataattg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47123678 |
ttttattctttgtactgaaattttatctgttttattacactaggctcaactgcagagcattatccatggagtcaatgtgtgtcatgaagctaaataattg |
47123579 |
T |
|
| Q |
401 |
acatgtcttcttggtttggccatttagtgtggaatgttggtgaaaattgggtctatgaatgtgctacaatcttttatggcgagtattgagaaattttgag |
500 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47123578 |
acatgtcttcttggtttggccatttagtttggaatgttggtgaaaattgggtatatgaatgtgctacaatcttttatggcgagtattgagaaattttgag |
47123479 |
T |
|
| Q |
501 |
taggcnnnnnnncatggcatgtgaacatcttgattcttgacggtacaaaattggtatcttcttgcatgatcttgtggagtctttggagaagaagaaac |
598 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47123478 |
taggctttttttcatggcatgcgaacatcttgattcttgacggtacaaaattggtatcttcttgcatgatcttgtggagtctttggagaagaagaaac |
47123381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University