View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14832_low_2 (Length: 359)
Name: NF14832_low_2
Description: NF14832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14832_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 20 - 345
Target Start/End: Complemental strand, 39560144 - 39559819
Alignment:
| Q |
20 |
gacaccaccgcagcagatccactagaagaacctcctgcaatcctactggcattatgtggatttcttgtagccctgtggagtgtaaataaacaaccaagct |
119 |
Q |
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| T |
39560144 |
gacaccaccgcagcagatccactagaagaacctcctgcaatcctactggcattatgtggatttcttgtagccctgtggagtgtaaataaacaaccaagct |
39560045 |
T |
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| Q |
120 |
cttgtcatcaactgattcaatacaaattcattaatatatagctcagaaagcacaaaaaatgtaacaaaatgtgaatactagtataaaacatggtttctta |
219 |
Q |
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| T |
39560044 |
cttgtcatcaactgattcaatacaaattcattaatatatagctcagaaagcacaaaaaatgtaacaaaatgtgaatactagtataaaacatggtttctta |
39559945 |
T |
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| Q |
220 |
cccataatgcggatttataccgctagttccagctccaagttcatgcatattagtctttccaacaagtacagcaccgcataatcttaaacgcttaatacaa |
319 |
Q |
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| T |
39559944 |
cccataatgcggatttataccgctagttccagctccaagttcatgcatattagtctttccaacaagtacagcaccgcataatcttaaacgcttaatacaa |
39559845 |
T |
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| Q |
320 |
caagcatcatctgtacaaggcctttg |
345 |
Q |
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| T |
39559844 |
caagcatcatctgtacaaggcctttg |
39559819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 215 - 344
Target Start/End: Complemental strand, 44420842 - 44420713
Alignment:
| Q |
215 |
tcttacccataatgcggatttataccgctagttccagctccaagttcatgcatattagtctttccaacaagtacagcaccgcataatcttaaacgcttaa |
314 |
Q |
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| T |
44420842 |
tcttacccataatgtggatttatcccactagttccagatccaagttcatgcatgttggatttcccaacaagtatggtgccacattgccttaaacgcttaa |
44420743 |
T |
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| Q |
315 |
tacaacaagcatcatctgtacaaggccttt |
344 |
Q |
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| T |
44420742 |
cacagcaagcatcatctttacaaggccttt |
44420713 |
T |
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