View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14832_low_3 (Length: 350)
Name: NF14832_low_3
Description: NF14832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14832_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 3726537 - 3726854
Alignment:
| Q |
19 |
aattgaccgtaagttcaaacacactgtgaaaatatattatatctaacagcaaaaaataataatatgctgataatctgat--gtcatatttcgagtgcagt |
116 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3726537 |
aattgaccgtaagttcaaacacactg--aaaatatattatatctaacagcaaaaaataataatatgctgataatctgatatgtcatatttcgagtgcagt |
3726634 |
T |
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| Q |
117 |
atcctcattgtcactgtaaattcaatgaaagaattgattctctaaattgtctttgtaacattgtcaataattcatggacaagtgtgggtagtttgttgtc |
216 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3726635 |
atcctcattgtcactgtaaattaaatgaaagaattgattctctaaattgtctttgtaacattgtcaataattcatggacaagtgtgggtagaatgttgtc |
3726734 |
T |
|
| Q |
217 |
aaaggttgctatccttcatgttttatggtaaatattacaacttcctgagaattccatgttatttatttgtcatgttagcttctactggtgtgtcttagga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3726735 |
aaaggttgctatccttcatgttttatggtaaatattacaacttcctgagaattccatgttatttatttgtcatgttagcttctactggtgtgtcttagga |
3726834 |
T |
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| Q |
317 |
catagtattaaactattgat |
336 |
Q |
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||| |||||||||||||||| |
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| T |
3726835 |
catggtattaaactattgat |
3726854 |
T |
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