View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14832_low_7 (Length: 249)
Name: NF14832_low_7
Description: NF14832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14832_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 48279054 - 48278812
Alignment:
| Q |
1 |
cacatacatcgataccagacacaataatgacacaaaaataaatttattgaacataatcaaatgtgtaggtgtcagacatcaacatacatccgatatgtta |
100 |
Q |
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| T |
48279054 |
cacatacatcgataccagacacagtaatgacacataaataaatttattgaacataatcaaatgtgtaggtgtcagacatcaacatacatccgatatgtta |
48278955 |
T |
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| Q |
101 |
cacgccattcattaaaagtaaattctgtgcaataaacattattca----caaattttaaacgatattaaacttttcatacatactcgataatgtcttcct |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||| |||| |
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| T |
48278954 |
cacgccattcattaaaagtaaattctgtgcaataaacattattcacaaacaaattttaaacgatattaaacttttcatacatacttgacaatgtcctcct |
48278855 |
T |
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| Q |
197 |
ttcctcttctgcaagttattttgtctttttcaatcaacctttg |
239 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |
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| T |
48278854 |
ttcctcttctgcaagtgattttgtctttttcaatcaacctttg |
48278812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 13810516 - 13810560
Alignment:
| Q |
34 |
aaaaataaatttattgaacataatcaaatgtgtaggtgtcagaca |
78 |
Q |
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| T |
13810516 |
aaaaatgaatttattgaacgtaatcacatgtgtcggtgtcagaca |
13810560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 40388545 - 40388319
Alignment:
| Q |
11 |
gataccagacacaataatgacacaaaaataaatttattgaacataatcaaatgtgtaggtgtcagacatcaacatacatccgatatgttacacgccattc |
110 |
Q |
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| T |
40388545 |
gatacgagacacaataatgacacaaa--taaatttattgaacataatcaaatgtgtaggtgtcagacatcaacatacatccgatatgttacacgccattc |
40388448 |
T |
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| Q |
111 |
attaaaagtaaattctgtgcaataaacattattcacaaattttaaacgatattaaacttttcatacatactcgataatgtcttcctttcctcttctgcaa |
210 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
40388447 |
attaaaaatatattctgtgcaataaacattattcacaaattttaaacgataataaacttttcatacatacttgacaatgtcttcctttcctcttctgcaa |
40388348 |
T |
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| Q |
211 |
gttattttgtctttttcaatcaacctttg |
239 |
Q |
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| T |
40388347 |
gtgattttgtctttttcaatcaacctttg |
40388319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 29632965 - 29632734
Alignment:
| Q |
1 |
cacatacatcgataccagacacaataatgacacaaaaataaatttattgaacataatcaaatgtgtaggtgtcagacatcaacatacatccgatatgtta |
100 |
Q |
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|||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29632965 |
cacatacaccgataccatacacaataatgacacataaataaatttattgaacataatcaaatgtgtaggtgtcagacatcaacatacatcatatatgtta |
29632866 |
T |
|
| Q |
101 |
cacgccattcattaaaagtaaattctgtgcaataaacattattcacaaattttaaacgatattaaacttttcatacatactcgataatgtcttcctttcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| || ||||||||| |
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| T |
29632865 |
cacgccattcattaaaagtaaattctgtgcaataaacattattcataaattttaaatgatattaaacttttcatacatacttga-------ttcctttcc |
29632773 |
T |
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| Q |
201 |
tcttctgcaagttattttgtctttttcaatcaacctttg |
239 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||| |
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| T |
29632772 |
tcttctgcaagtgattttgtctttttcaatcaacctttg |
29632734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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