View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14832_low_8 (Length: 236)
Name: NF14832_low_8
Description: NF14832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14832_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 40388554 - 40388666
Alignment:
| Q |
1 |
tgtatgtgcttcataagtgtatactatgttttctattggggaacctaaaagcgcaacaatatgacaacccttcaccatgatcattcttttccatgcggaa |
100 |
Q |
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||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40388554 |
tgtatgtgcttcataagtgtagactatgtttcctattggggaacctaaaagcgcaacaatatgacaacccttcaccatgatcattcttttccacacggaa |
40388653 |
T |
|
| Q |
101 |
tggttagtgctcc |
113 |
Q |
| |
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||||||| |||| |
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| T |
40388654 |
cggttagtactcc |
40388666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 29632964 - 29633077
Alignment:
| Q |
1 |
tgtatgtgctt-cataagtgtatactatgttttctattggggaacctaaaagcgcaacaatatgacaacccttcaccatgatcattcttttccatgcgga |
99 |
Q |
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||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29632964 |
tgtatgtgctttcataagtgtagactatgttttctgttggggaacctaaaagcgcaacaatatgacaacccttcaccatgatcattcttttccacgcgga |
29633063 |
T |
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| Q |
100 |
atggttagtgctcc |
113 |
Q |
| |
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| T |
29633064 |
acggttagtactcc |
29633077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 29633141 - 29633185
Alignment:
| Q |
177 |
tgcattttctcttattagtctctgaattttttagagaattgttaa |
221 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29633141 |
tgcatttttgcttattagtctctgaattttttagagaattgttaa |
29633185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 40388730 - 40388774
Alignment:
| Q |
177 |
tgcattttctcttattagtctctgaattttttagagaattgttaa |
221 |
Q |
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|||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
40388730 |
tgcatttttgcttattagtctctgaattttttagagaatggttaa |
40388774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 48279053 - 48279165
Alignment:
| Q |
1 |
tgtatgtgcttcataagtgtatactatgttttctattggggaacctaaaagcgcaacaatatgacaacccttcaccatgatcattcttttccatgcggaa |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
48279053 |
tgtatgtgcttcataagtgtagactatgttttctattgggaaacctaaaagcgcaacaatatgacaacccttcatcatgatcattcttttccacgcggaa |
48279152 |
T |
|
| Q |
101 |
tggttagtgctcc |
113 |
Q |
| |
|
||||||| |||| |
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|
| T |
48279153 |
cggttagtactcc |
48279165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 48279229 - 48279272
Alignment:
| Q |
177 |
tgcattttctcttattagtctctgaattttttagagaattgttaa |
221 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||| |
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|
| T |
48279229 |
tgcattttttcttattagtctct-aattttttagagaattgttaa |
48279272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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