View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14833_high_17 (Length: 352)
Name: NF14833_high_17
Description: NF14833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14833_high_17 |
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| [»] chr5 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 133 - 352
Target Start/End: Original strand, 8953786 - 8954005
Alignment:
| Q |
133 |
ctatgtccccgatgtaataagcataatgagtcattcctttattataatatagactgttcagcttctagaaatctttggcatgctcttggtttatccaatg |
232 |
Q |
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| T |
8953786 |
ctatgtccccgatgtaataaacataatgagtcattcatttattgtaatatagactatttagcttctagaaatctttggcatgctcttggtttatccaatg |
8953885 |
T |
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| Q |
233 |
ttgacttcctttccgacttagacataatcagttggctcaaagagggtctatcttcgatcaactccaacacttatgccgcaactatatggtggacttggct |
332 |
Q |
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| T |
8953886 |
ttgacttcctttccgacttagacgtaatctgttggctcaaagagggtctatcttcgatcaactccaacacttttgccgcaactatatggtggacttggct |
8953985 |
T |
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| Q |
333 |
taatcacaattatttttgct |
352 |
Q |
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| T |
8953986 |
taatcacaattatttttgct |
8954005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 8951590 - 8951705
Alignment:
| Q |
18 |
tttaatatgacgcctccatctttcaaaaaagatcaagttccttatttgggtttcttgcaataattttgtccccaccatgttattgtttcaccgccgcaac |
117 |
Q |
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| T |
8951590 |
tttaatatgaagcctccatcttccaaaaaagatcaagttccttatttgattttcttgcaataattttgtccccaccatgttattgtttcgccgc-----c |
8951684 |
T |
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| Q |
118 |
ttggctcttaatggtctatgt |
138 |
Q |
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| T |
8951685 |
ttggctcttaatggtctatgt |
8951705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 352
Target Start/End: Complemental strand, 9367210 - 9367146
Alignment:
| Q |
288 |
gatcaactccaacacttatgccgcaactatatggtggacttggcttaatcacaattatttttgct |
352 |
Q |
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| T |
9367210 |
gatcaagtccaacacttttgtcgcaagtatttggtggtcttgacataatcacaattatttttgct |
9367146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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