View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14833_high_21 (Length: 301)
Name: NF14833_high_21
Description: NF14833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14833_high_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 38375256 - 38374997
Alignment:
| Q |
18 |
tgtttgactatttttgcagtatggattgcaacaatgagagatgtggcgttgggaatgaatgtcaaattttacaaacttgtaactcagcatattctggtga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38375256 |
tgtttgactatttttgcagtatggattgcaacaatgagagatgtggcgttgggaatgaatgtcaaattttacaaacttgtaactcagcatattctggtga |
38375157 |
T |
|
| Q |
118 |
cggtgattctgaaccaccaaaaaagaagcttaaaaggtttaatgtttggaactactttgtcaaaattaataaaaatggaaaagaaatgtgtgagtgtatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38375156 |
cggtgattctgaaccaccaaaaaagaagcttaaaaggtttaatgtttggaactactttgtcaaaattaataaaaatggaaaagaaatgtgtgagtgtatg |
38375057 |
T |
|
| Q |
218 |
acttgtgggaaactgtttacttgtggcggaagatcaggtatctctcatctaatccaacatattcccaaatgtcctttg |
295 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38375056 |
actt------------------gtggcggaagatcaggtatctctcatctaatccaacatattcccaaatgtcctttg |
38374997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 104 - 295
Target Start/End: Complemental strand, 38380361 - 38380170
Alignment:
| Q |
104 |
gcatattctggtgacggtgattctgaaccaccaaaaaagaagcttaaaaggtttaatgtttggaactactttgtcaaaattaataaaaatggaaaagaaa |
203 |
Q |
| |
|
|||||||||| | | |||||||| ||||| ||||| || | ||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| |
|
|
| T |
38380361 |
gcatattctgattatggtgattccgaacctccaaagaaaaggcttaaaaggtttaatgtttggaactactttgtcaaagttcataaagatggaaaagaaa |
38380262 |
T |
|
| Q |
204 |
tgtgtgagtgtatgacttgtgggaaactgtttacttgtggcggaagatcaggtatctctcatctaatccaacatattcccaaatgtcctttg |
295 |
Q |
| |
|
||||||| |||||||||||||||| | |||||||||||| ||||| ||||||| ||||||||||| || |||||||||| |||||||||| |
|
|
| T |
38380261 |
tgtgtgaatgtatgacttgtgggagagtgtttacttgtgatggaaggtcaggtaactctcatctaaacctacatattcccgtatgtcctttg |
38380170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 95 - 295
Target Start/End: Complemental strand, 38370477 - 38370277
Alignment:
| Q |
95 |
tgtaactcagcatattctggtgacggtgattctgaaccaccaaaaaagaagcttaaaaggtttaatgtttggaactactttgtcaaaattaataaaaatg |
194 |
Q |
| |
|
||||||||||||||||||| || ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| | | ||| |
|
|
| T |
38370477 |
tgtaactcagcatattctgatg---gtgatcatgaaccaccaaataagaagcttaaaaggtttaatgtttggaactactttgttaaaattgaagcagatg |
38370381 |
T |
|
| Q |
195 |
gaaaagaaatgtgtgagtgtatgacttgtgggaaactgtttacttgtggcggaagatcaggtatctctcatctaa------tccaacatattcccaaatg |
288 |
Q |
| |
|
| |||||| ||||||| |||| ||||||||||||| ||||| || | ||||| ||||||| |||||||||| ||||||||||| ||||||| |
|
|
| T |
38370380 |
gtaaagaactgtgtgaatgtaaaacttgtgggaaacagtttatttct---ggaaggacaggtatatctcatctaaaccaagtccaacatattaccaaatg |
38370284 |
T |
|
| Q |
289 |
tcctttg |
295 |
Q |
| |
|
||||||| |
|
|
| T |
38370283 |
tcctttg |
38370277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University