View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14833_high_25 (Length: 270)
Name: NF14833_high_25
Description: NF14833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14833_high_25 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 270
Target Start/End: Original strand, 27579664 - 27579918
Alignment:
| Q |
14 |
tgacatgtattttgaaattgatggagataaccaacttgatttagttcggttatgtnnnnnnnn--ttctcacgacatctgaatcaaactaaatatagatg |
111 |
Q |
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| T |
27579664 |
tgacatgtattttgaaactgacgaagataaccaacttgatttggttcggttatgtaaaaaaaaaattctcaggacatctaaatcaaactaaata--gatg |
27579761 |
T |
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| Q |
112 |
aaaa-aatgatttggtttgattgagttcttctattagtcactttcaaatagttaagaaacttgtcttagaatatctataataatgagtaaaaaataacac |
210 |
Q |
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| T |
27579762 |
aaaaaaatgatttggtttgattgtgttcttctattagaaactttcaaatagttaagaaacttgtcttagaatatctataataatgagtaaaaaataacac |
27579861 |
T |
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| Q |
211 |
tactagaataatagtatagtaagaattaaactaaatttgaattgaatcatcaaattcatt |
270 |
Q |
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| T |
27579862 |
tactag---aatagtatagtatgaattaaactaaatttgaattgaatcatcaaattcatt |
27579918 |
T |
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Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 152 - 270
Target Start/End: Original strand, 2571208 - 2571324
Alignment:
| Q |
152 |
tttcaaatagttaagaaacttgtcttagaatatctataataatgagtaaaaaataacactactagaataatagtatagtaagaatt-aaactaaatttga |
250 |
Q |
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| T |
2571208 |
tttcaaatagttaagaaacttgtcttaaaatatctataataatgagtaaaaaataacactactag---aatagtatagtatgaattaaaactaaatttga |
2571304 |
T |
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| Q |
251 |
attgaatcatcaaattcatt |
270 |
Q |
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| T |
2571305 |
attgaatcatcaaattcatt |
2571324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 2571117 - 2571171
Alignment:
| Q |
14 |
tgacatgtattttgaaattgatggagataaccaacttgatttagttcggttatgt |
68 |
Q |
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| T |
2571117 |
tgacatgtattttgaaaatgacggagataactaacttgatttggttcggttatgt |
2571171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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