View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14833_high_6 (Length: 458)
Name: NF14833_high_6
Description: NF14833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14833_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 19 - 442
Target Start/End: Complemental strand, 40950859 - 40950436
Alignment:
| Q |
19 |
ctaatagaaaaggaaacatagacagagaatttgagtggggaacatgaggagcataagaactacagtgtgaaagaaagatagggatgctaaagaaggatgc |
118 |
Q |
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| T |
40950859 |
ctaatagaaaaggaaacatagacaaagaatttgagtggggaacatgaggagcataagaactacagtgtgaaagaaagatagggatgctaaagaaggatgc |
40950760 |
T |
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| Q |
119 |
aattggccccataaccatgtgaagtgctttttggacagtcatcttatcttgttggtcgcatttatttgactgtaactatgcaggcgagtctactctattt |
218 |
Q |
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| T |
40950759 |
aattggccccataaccatgtgaagtgctttttggacagtcatcttatcttgttggtcgcatttatttgactgtaactatgcaggcgagtctactctattt |
40950660 |
T |
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| Q |
219 |
gtagctatttgtaattaatccatatagtccctagactatgactatactatagagagctacatatcatatagatctaagatcatagtcatggaaaaaataa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40950659 |
gtagctatttgtaattaatccatatagtccctagactatgactatactatagagagctacatatcatatagatctaagatcatagtcatggaaaaaataa |
40950560 |
T |
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| Q |
319 |
ttttgaaacttcaaactgttttgtccgtggcttaaatacctttcaccttttactaactaacttatccttcatttgcatggaaatcatgatgggcacacta |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40950559 |
ttttgaaacttcaaactgttttgtccgtggcttaaatacctttcaccttttactaactaacttatccttcatttgcatggaaatcatgatgggcacacta |
40950460 |
T |
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| Q |
419 |
gggctaatccatccatacagttct |
442 |
Q |
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| T |
40950459 |
gggctaatccatccatacagttct |
40950436 |
T |
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