View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14833_high_8 (Length: 439)
Name: NF14833_high_8
Description: NF14833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14833_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 20 - 429
Target Start/End: Complemental strand, 6578297 - 6577891
Alignment:
| Q |
20 |
ccttggtgactgtgatttggtatgagatgaagcagctagagattgatctcaacaacaaggcagccacgagggatgctaaggacaatctctcttgcactct |
119 |
Q |
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| T |
6578297 |
ccttggtgactgtgatttggtatgagatgaagcagctagagattgatctcaacaacaaggcagccacgagggatgctaaggacaatctctcttgcactct |
6578198 |
T |
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| Q |
120 |
ctcttagacactctttcattcattggtccacatcatcatttttcatcacttttcataaactttgtacatgaaaagtcaccttcttcttcttcactgtgca |
219 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6578197 |
ctcttagacactttttcattcattggtccacatcatcatttttcatcacttttcataaactttgtacatgaaaagtcaccttctt---cttcactgtgca |
6578101 |
T |
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| Q |
220 |
tcgaattggaaacctattttaataatcatcaaaaagaattctgctaaaacacactatcaaagctcaacaagttaaatacttgctttttctacatggtaaa |
319 |
Q |
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| T |
6578100 |
tcgaattggaaacctattttaataatcatcaaaaagaattctgctaaaacacactatcaaagctcaacaagttaaatacttgctctttctatatggtaaa |
6578001 |
T |
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| Q |
320 |
catgagttatttctctaattnnnnnnntgggttccttgatttcttagcggttctttgattttctctgcatttctctttatcacatctgcagtaacccacc |
419 |
Q |
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| T |
6578000 |
catgagttatttctctaattaaaaaaatgggttccttgatttcttagcggttctttgattttctctgcatttctctttatcacatctgcagtaacccacc |
6577901 |
T |
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| Q |
420 |
ctcatcaatt |
429 |
Q |
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| T |
6577900 |
ctcatcaatt |
6577891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 42202011 - 42202086
Alignment:
| Q |
87 |
gagggatgctaaggacaatctctcttgcactctctcttagacactctttcattcattggtccacatcatcattttt |
162 |
Q |
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| T |
42202011 |
gagggatgctaacgataatatatcttacactttctcttagacactcttttattcattggtccacatcatcattttt |
42202086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 31305880 - 31305830
Alignment:
| Q |
87 |
gagggatgctaaggacaatctctcttgcactctctcttagacactctttca |
137 |
Q |
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| T |
31305880 |
gaggaatgctaaggacaacctctctcgcactctctcttaaacactctttca |
31305830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 42641504 - 42641467
Alignment:
| Q |
87 |
gagggatgctaaggacaatctctcttgcactctctctt |
124 |
Q |
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| T |
42641504 |
gagggatgctaaggacaatcactcttacactctctctt |
42641467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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