View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14833_high_9 (Length: 431)

Name: NF14833_high_9
Description: NF14833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14833_high_9
NF14833_high_9
[»] chr1 (10 HSPs)
chr1 (2-416)||(15577028-15577443)
chr1 (283-380)||(4379891-4379988)
chr1 (276-375)||(26016316-26016415)
chr1 (304-379)||(9509225-9509300)
chr1 (300-377)||(52442806-52442883)
chr1 (308-379)||(9599694-9599765)
chr1 (314-379)||(22090011-22090076)
chr1 (314-379)||(1210662-1210727)
chr1 (276-357)||(19936401-19936482)
chr1 (314-378)||(43240682-43240746)
[»] chr7 (19 HSPs)
chr7 (276-416)||(30200223-30200362)
chr7 (276-380)||(40139215-40139319)
chr7 (283-416)||(36514467-36514601)
chr7 (300-377)||(24549989-24550066)
chr7 (276-380)||(42177314-42177418)
chr7 (301-380)||(36102064-36102143)
chr7 (276-350)||(23720729-23720803)
chr7 (314-379)||(11593877-11593942)
chr7 (314-379)||(33072871-33072936)
chr7 (314-379)||(35906501-35906566)
chr7 (308-365)||(42187382-42187439)
chr7 (319-364)||(47848596-47848641)
chr7 (276-356)||(1740677-1740756)
chr7 (314-358)||(14593678-14593722)
chr7 (314-358)||(16013201-16013245)
chr7 (336-380)||(27022005-27022049)
chr7 (314-370)||(31005140-31005196)
chr7 (336-380)||(39811896-39811940)
chr7 (276-312)||(41948397-41948433)
[»] chr4 (18 HSPs)
chr4 (300-380)||(43070063-43070143)
chr4 (300-358)||(33709822-33709880)
chr4 (300-380)||(31403319-31403399)
chr4 (276-357)||(44860733-44860814)
chr4 (314-380)||(20105770-20105836)
chr4 (283-380)||(25257878-25257974)
chr4 (300-380)||(10775721-10775801)
chr4 (328-416)||(45423550-45423637)
chr4 (308-380)||(49987339-49987411)
chr4 (308-379)||(45205148-45205219)
chr4 (301-380)||(11389624-11389705)
chr4 (335-380)||(2588919-2588964)
chr4 (314-379)||(31960114-31960179)
chr4 (300-369)||(54470110-54470179)
chr4 (336-416)||(10208977-10209056)
chr4 (302-378)||(17900385-17900461)
chr4 (317-369)||(25755237-25755289)
chr4 (304-356)||(44359991-44360042)
[»] chr2 (11 HSPs)
chr2 (283-358)||(23714579-23714654)
chr2 (283-358)||(24102251-24102326)
chr2 (301-379)||(7825262-7825340)
chr2 (310-380)||(42092432-42092502)
chr2 (328-380)||(9556667-9556719)
chr2 (300-396)||(9647889-9647984)
chr2 (309-364)||(4598879-4598934)
chr2 (314-379)||(3865989-3866054)
chr2 (314-379)||(8180697-8180762)
chr2 (301-358)||(45077652-45077709)
chr2 (319-379)||(12734623-12734683)
[»] chr5 (7 HSPs)
chr5 (301-380)||(9234973-9235052)
chr5 (276-379)||(31636218-31636317)
chr5 (319-416)||(32516480-32516578)
chr5 (302-357)||(4026656-4026711)
chr5 (276-358)||(27998302-27998384)
chr5 (335-380)||(6888931-6888976)
chr5 (328-376)||(34194799-34194847)
[»] chr3 (11 HSPs)
chr3 (301-379)||(45236760-45236838)
chr3 (319-414)||(29919226-29919318)
chr3 (319-414)||(29968379-29968471)
chr3 (300-380)||(49841514-49841594)
chr3 (319-370)||(19736918-19736969)
chr3 (314-380)||(46568033-46568099)
chr3 (328-389)||(48777506-48777566)
chr3 (283-348)||(50632162-50632227)
chr3 (314-379)||(51448009-51448074)
chr3 (286-358)||(27917461-27917533)
chr3 (276-380)||(55244181-55244285)
[»] chr8 (11 HSPs)
chr8 (276-380)||(13171948-13172052)
chr8 (328-380)||(36069574-36069626)
chr8 (282-380)||(16917069-16917167)
chr8 (279-416)||(42493566-42493704)
chr8 (335-380)||(32043528-32043573)
chr8 (339-416)||(33511302-33511378)
chr8 (314-379)||(36395250-36395315)
chr8 (314-379)||(36545064-36545129)
chr8 (314-379)||(39946774-39946839)
chr8 (278-358)||(16351271-16351351)
chr8 (336-380)||(44681338-44681382)
[»] chr6 (7 HSPs)
chr6 (302-378)||(33998305-33998381)
chr6 (328-379)||(5631749-5631800)
chr6 (306-370)||(6293678-6293742)
chr6 (301-350)||(2079237-2079286)
chr6 (335-380)||(9568598-9568643)
chr6 (301-353)||(12134227-12134279)
chr6 (314-358)||(32755836-32755880)


Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 2 - 416
Target Start/End: Original strand, 15577028 - 15577443
Alignment:
Q  2 ttttatgttaaattttgaatcttttggaaaatttatgaaatgggtttttcttatttctcaatttcagttactgggtcggtcctaaaaagtgaaattggta 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15577028 ttttatgttaaattttgaatcttttggaaaatttatgaaatgggtttttcttatttctcaatttcagttactgggtcggtcctaaaaagtgaaattggta 15577127  T
Q  102 acctcaaaatattgtttgt-gtctgtcatctgatctgtttcatgtttctgtcagttggagttctgttttttaggaaaggaagttgtgatgatctcataga 200  Q
    ||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15577128 acctcaaaatattgttttttgtctgtcatctaatctgtttcatgtttctgtcagttggagttctgttttttaggaaaggaagttgtgatgatctcataga 15577227  T
Q  201 attttgaactctgcatagttgtaagacaattatttttaagcttttaggtgttaataaatgcaatcagcttttaaattgggctgtaaagaaccaaaatgga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15577228 attttgaactctgcatagttgtaagacaattatttttaagcttttaggtgttaataaatgcaatcagcttttaaattgggctgtaaagaaccaaaatgga 15577327  T
Q  301 aataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgacaaatattatagagttgggatac 400  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||     
T  15577328 aataaattaagcttagcagagatgatcatgtcgtgttggatgtgcggtaagactagacgggatgtgattataaatgacaaatattatagagttgggatat 15577427  T
Q  401 cacttatagtagaaaa 416  Q
    ||||||||||||||||    
T  15577428 cacttatagtagaaaa 15577443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 283 - 380
Target Start/End: Original strand, 4379891 - 4379988
Alignment:
Q  283 gtaaagaaccaaaatggaaataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgacaa 380  Q
    |||||||||||| | | |||||||| ||||||||| |||||||  |||| |||||||||||||||||||||||||   |||||||||| |||||||||    
T  4379891 gtaaagaaccaacacgaaaataaataaagcttagctgagatgaggatgttgtgttggatgtgtggtaagactagaaaagatatgattagaaatgacaa 4379988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 276 - 375
Target Start/End: Original strand, 26016316 - 26016415
Alignment:
Q  276 ttgggctgtaaagaaccaaaatggaaataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaat 375  Q
    |||||| |||||||||||| | | | ||||| ||||| ||||||||||||  |||| | |||||||||||||||||||||||| |||||| |||||||||    
T  26016316 ttgggcggtaaagaaccaacaagaacataaagtaagcgtagcagagatgaggatgttgcgttggatgtgtggtaagactagacaggatataattataaat 26016415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 304 - 379
Target Start/End: Original strand, 9509225 - 9509300
Alignment:
Q  304 aaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgaca 379  Q
    ||||||||| ||||||||||||  |||| |||||||||| ||| ||||||||||| ||||||||||| ||||||||    
T  9509225 aaattaagcgtagcagagatgaggatgttgtgttggatgagtgataagactagacaggatatgattagaaatgaca 9509300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 52442883 - 52442806
Alignment:
Q  300 aaataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatga 377  Q
    ||||||||||||| ||||||| ||||  |||| ||||||||||||||||||||||||||  |||| ||||| ||||||    
T  52442883 aaataaattaagcgtagcagacatgaggatgttgtgttggatgtgtggtaagactagacaagataagattagaaatga 52442806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 308 - 379
Target Start/End: Complemental strand, 9599765 - 9599694
Alignment:
Q  308 taagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgaca 379  Q
    ||||| ||||||||||||  |||| |||||||||| ||||||||||||||| |||||||||||  |||||||    
T  9599765 taagcgtagcagagatgaggatgttgtgttggatgagtggtaagactagacgggatatgattaggaatgaca 9599694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 379
Target Start/End: Original strand, 22090011 - 22090076
Alignment:
Q  314 tagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgaca 379  Q
    ||||||||||||  |||  |||||||||| ||||||||||||||| ||||| |||||| |||||||    
T  22090011 tagcagagatgaggatgctgtgttggatgagtggtaagactagacaggataggattatgaatgaca 22090076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 379
Target Start/End: Original strand, 1210662 - 1210727
Alignment:
Q  314 tagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgaca 379  Q
    ||||||||||||  |||| | |||||||| ||||||||||||||| ||||| |||||  |||||||    
T  1210662 tagcagagatgaggatgttgcgttggatgagtggtaagactagacaggataggattaggaatgaca 1210727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 357
Target Start/End: Original strand, 19936401 - 19936482
Alignment:
Q  276 ttgggctgtaaagaaccaaaatggaaataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactaga 357  Q
    |||||| || ||||||||| |||  ||| || ||||| |||| |||||||  |||| |||||||||| ||||||||||||||    
T  19936401 ttgggcggttaagaaccaacatgagaatcaaataagcatagcggagatgagaatgttgtgttggatgagtggtaagactaga 19936482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 378
Target Start/End: Complemental strand, 43240746 - 43240682
Alignment:
Q  314 tagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgac 378  Q
    ||||||||||||  |||| | |||||||| |||||||||||||||  |||| |||||| ||||||    
T  43240746 tagcagagatgaggatgttgcgttggatgagtggtaagactagacatgataggattatgaatgac 43240682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 276 - 416
Target Start/End: Complemental strand, 30200362 - 30200223
Alignment:
Q  276 ttgggctgtaaagaaccaaaatggaaataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaat 375  Q
    |||| |||| |||||||||  |||||||||| ||||  ||||||||||||  |||| |||||||||||||||||||| ||||  ||||||||||| ||||    
T  30200362 ttggtctgtcaagaaccaacttggaaataaactaagtgtagcagagatgaggatgttgtgttggatgtgtggtaagattagatgggatatgattagaaat 30200263  T
Q  376 gacaaatattatagagttgggataccacttatagtagaaaa 416  Q
    ||| || |||| |||||| || || ||| ||||||||||||    
T  30200262 gac-aacattagagagttagggtaacacctatagtagaaaa 30200223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 276 - 380
Target Start/End: Complemental strand, 40139319 - 40139215
Alignment:
Q  276 ttgggctgtaaagaaccaaaatggaaataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaat 375  Q
    ||||| ||| ||||||||| | ||||||||||| ||| | ||||||| ||  |||| |||| ||||||||||||||||||||| ||||| ||||| |||     
T  40139319 ttgggttgttaagaaccaacacggaaataaattcagcgttgcagagacgaggatgttgtgtgggatgtgtggtaagactagacgggataagattagaaaa 40139220  T
Q  376 gacaa 380  Q
    |||||    
T  40139219 gacaa 40139215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 283 - 416
Target Start/End: Complemental strand, 36514601 - 36514467
Alignment:
Q  283 gtaaagaaccaaaatggaaataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgacaa-a 381  Q
    |||||||||||| | | ||||||||||||  ||||||||||||  |||| | ||||||||||||||||||||| || |||||  |||| ||| ||||| |    
T  36514601 gtaaagaaccaacacgaaaataaattaagtgtagcagagatgaggatgttgcgttggatgtgtggtaagactaaacgggatagaattagaaaggacaaca 36514502  T
Q  382 tattatagagttgggataccacttatagtagaaaa 416  Q
    |   | ||||||||| || ||| ||||||||||||    
T  36514501 ttagagagagttggggtagcacctatagtagaaaa 36514467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 24550066 - 24549989
Alignment:
Q  300 aaataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatga 377  Q
    |||||||||| || ||||||||||||  |||| ||||||||||||| |||||||||||  | ||||||||| ||||||    
T  24550066 aaataaattatgcgtagcagagatgaggatgttgtgttggatgtgttgtaagactagatagaatatgattagaaatga 24549989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 380
Target Start/End: Complemental strand, 42177418 - 42177314
Alignment:
Q  276 ttgggctgtaaagaaccaaaatggaaataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaat 375  Q
    |||| |||||||| ||||| | | ||||||||||||| || ||| ||| |  ||||  |||||||| ||||||||||||| || |||| |||||| ||||    
T  42177418 ttggactgtaaaggaccaacacgaaaataaattaagcataacagtgataaagatgttttgttggatatgtggtaagactatactggatttgattagaaat 42177319  T
Q  376 gacaa 380  Q
    |||||    
T  42177318 gacaa 42177314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 380
Target Start/End: Complemental strand, 36102143 - 36102064
Alignment:
Q  301 aataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgacaa 380  Q
    ||||||||||||  |||||||||||  |||| | ||| |||||||||||||||||||  ||||  ||||| |||||||||    
T  36102143 aataaattaagcgcagcagagatgaaaatgttgagttcgatgtgtggtaagactagatgggatgagattagaaatgacaa 36102064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 350
Target Start/End: Original strand, 23720729 - 23720803
Alignment:
Q  276 ttgggctgtaaagaaccaaaatggaaataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaa 350  Q
    ||||||| ||||||||||| | ||| |||||| |||  ||| ||||||||  |||| ||||||||||||||||||    
T  23720729 ttgggctttaaagaaccaacacggatataaatgaagtgtagtagagatgagaatgttgtgttggatgtgtggtaa 23720803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 379
Target Start/End: Original strand, 11593877 - 11593942
Alignment:
Q  314 tagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgaca 379  Q
    ||||||||||||  |||| | |||||||| ||||||||||||||| ||||| |||||  |||||||    
T  11593877 tagcagagatgaggatgttgcgttggatgagtggtaagactagacaggataagattaggaatgaca 11593942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 379
Target Start/End: Original strand, 33072871 - 33072936
Alignment:
Q  314 tagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgaca 379  Q
    ||||||||||||| |||| | |||||||| |||||||||||||||  |||| |||||  |||||||    
T  33072871 tagcagagatgatgatgttgcgttggatgagtggtaagactagacaagataggattaggaatgaca 33072936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 379
Target Start/End: Complemental strand, 35906566 - 35906501
Alignment:
Q  314 tagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgaca 379  Q
    ||||||||||||  |||| | |||||||| ||||||||||||||| ||||| |||||  |||||||    
T  35906566 tagcagagatgaggatgttgcgttggatgagtggtaagactagacaggataggattaggaatgaca 35906501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 365
Target Start/End: Original strand, 42187382 - 42187439
Alignment:
Q  308 taagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatat 365  Q
    ||||| |||| |||||||  |||| ||||||||||||| |||||||||||| ||||||    
T  42187382 taagcgtagcggagatgaggatgttgtgttggatgtgtagtaagactagacgggatat 42187439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 364
Target Start/End: Original strand, 47848596 - 47848641
Alignment:
Q  319 gagatgatcatgtcgtgttggatgtgtggtaagactagaccggata 364  Q
    |||||||  |||| |||||||||||||||||||||||||| |||||    
T  47848596 gagatgaggatgttgtgttggatgtgtggtaagactagacgggata 47848641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 356
Target Start/End: Original strand, 1740677 - 1740756
Alignment:
Q  276 ttgggctgtaaagaaccaaaatggaaataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactag 356  Q
    ||||| ||||||||||| | |||||||||| | |||  ||||||||||||  |||| | ||||||||||| ||||||||||    
T  1740677 ttgggttgtaaagaacccacatggaaataagt-aagtgtagcagagatgaggatgttgcgttggatgtgtagtaagactag 1740756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 358
Target Start/End: Original strand, 14593678 - 14593722
Alignment:
Q  314 tagcagagatgatcatgtcgtgttggatgtgtggtaagactagac 358  Q
    ||||||||||||  |||| | ||||||||||||||||||||||||    
T  14593678 tagcagagatgaggatgttgcgttggatgtgtggtaagactagac 14593722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 358
Target Start/End: Original strand, 16013201 - 16013245
Alignment:
Q  314 tagcagagatgatcatgtcgtgttggatgtgtggtaagactagac 358  Q
    ||||||||||||  |||| | ||||||||||||||||||||||||    
T  16013201 tagcagagatgaggatgttgcgttggatgtgtggtaagactagac 16013245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 380
Target Start/End: Complemental strand, 27022049 - 27022005
Alignment:
Q  336 ttggatgtgtggtaagactagaccggatatgattataaatgacaa 380  Q
    ||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  27022049 ttggatgtgtgataagactagacaggataggattaaaaatgacaa 27022005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 370
Target Start/End: Original strand, 31005140 - 31005196
Alignment:
Q  314 tagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgatta 370  Q
    ||||||||||||  |||| | |||||||| ||||||||||||||| ||||| |||||    
T  31005140 tagcagagatgaggatgttgcgttggatgagtggtaagactagacaggataggatta 31005196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 380
Target Start/End: Original strand, 39811896 - 39811940
Alignment:
Q  336 ttggatgtgtggtaagactagaccggatatgattataaatgacaa 380  Q
    |||||||||||||||||||||||  |||| ||||| |||||||||    
T  39811896 ttggatgtgtggtaagactagacgtgataggattagaaatgacaa 39811940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 41948397 - 41948433
Alignment:
Q  276 ttgggctgtaaagaaccaaaatggaaataaattaagc 312  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  41948397 ttgggctgtaaagaaccaacatgaaaataaattaagc 41948433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 300 - 380
Target Start/End: Complemental strand, 43070143 - 43070063
Alignment:
Q  300 aaataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgacaa 380  Q
    |||||| |||||  |||||||||||||||||| | |||||||||||||||||| ||||| ||||| ||||| |||||||||    
T  43070143 aaataatttaagtgtagcagagatgatcatgttgggttggatgtgtggtaagattagacaggataggattagaaatgacaa 43070063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 300 - 358
Target Start/End: Original strand, 33709822 - 33709880
Alignment:
Q  300 aaataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagac 358  Q
    ||||||||||||| ||||||||||||| |||| | ||||||||||||||||||||||||    
T  33709822 aaataaattaagcctagcagagatgatgatgttgcgttggatgtgtggtaagactagac 33709880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 380
Target Start/End: Complemental strand, 31403399 - 31403319
Alignment:
Q  300 aaataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgacaa 380  Q
    ||||||||||||| ||||||||||||| |||| | |||| ||||||||| ||| ||||| ||||| ||||| |||||||||    
T  31403399 aaataaattaagcgtagcagagatgatgatgttgagttgaatgtgtggtgagattagacgggataggattagaaatgacaa 31403319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 357
Target Start/End: Original strand, 44860733 - 44860814
Alignment:
Q  276 ttgggctgtaaagaaccaaaatggaaataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactaga 357  Q
    ||||||||| |||||||||   | ||||||||||||  ||||||| ||||  |||| |||||||||||||||||||||||||    
T  44860733 ttgggctgtgaagaaccaaggagaaaataaattaagtgtagcagaaatgaggatgttgtgttggatgtgtggtaagactaga 44860814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 380
Target Start/End: Complemental strand, 20105836 - 20105770
Alignment:
Q  314 tagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgacaa 380  Q
    |||| |||||||| |||| | | ||||||||||||||||||||||  |||||||||| |||||||||    
T  20105836 tagcggagatgatgatgttgcgatggatgtgtggtaagactagacgagatatgattagaaatgacaa 20105770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 380
Target Start/End: Complemental strand, 25257974 - 25257878
Alignment:
Q  283 gtaaagaaccaaaatggaaataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgacaa 380  Q
    |||||||||||| ||| ||| ||||| ||| ||||| |||||| | ||| ||||||||||||| ||||||||||||  ||||  |||| |||||||||    
T  25257974 gtaaagaaccaacatg-aaagaaattgagcgtagcaaagatgagcttgttgtgttggatgtgtagtaagactagacatgatagaattagaaatgacaa 25257878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 380
Target Start/End: Complemental strand, 10775801 - 10775721
Alignment:
Q  300 aaataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgacaa 380  Q
    ||||||||||||| ||||||||||||| |||| |||||||||| |||| | ||| |||| ||| |  |||| |||||||||    
T  10775801 aaataaattaagcgtagcagagatgatgatgttgtgttggatgcgtggcaggaccagacaggaaagaattagaaatgacaa 10775721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 416
Target Start/End: Original strand, 45423550 - 45423637
Alignment:
Q  328 atgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgacaaatattatagagttgggataccacttatagtagaaaa 416  Q
    |||| ||||||| |||||||||||||||||| |||||  |||| ||||||| || |||||||||||| | || ||| |||| |||||||    
T  45423550 atgttgtgttggttgtgtggtaagactagacgggatagaattagaaatgac-aacattatagagttgaggtagcacctataatagaaaa 45423637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 380
Target Start/End: Original strand, 49987339 - 49987411
Alignment:
Q  308 taagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgacaa 380  Q
    ||||||||||||||||||  |||| |||||| |||| | ||||||||||||  |||| ||||| |||||||||    
T  49987339 taagcttagcagagatgaggatgttgtgttgaatgtttagtaagactagacatgataggattagaaatgacaa 49987411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 379
Target Start/End: Complemental strand, 45205219 - 45205148
Alignment:
Q  308 taagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgaca 379  Q
    ||||| |||| |||||||  |||| |||||||||| ||||||||||||||| ||||| |||||  |||||||    
T  45205219 taagcgtagcggagatgaggatgttgtgttggatgagtggtaagactagacgggataggattaggaatgaca 45205148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 380
Target Start/End: Original strand, 11389624 - 11389705
Alignment:
Q  301 aataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatat--gattataaatgacaa 380  Q
    |||||| ||||| ||||||||||||  |||| |  ||||||||||||||| ||||||| ||||||  ||||| |||||||||    
T  11389624 aataaagtaagcgtagcagagatgaggatgttggattggatgtgtggtaaaactagacgggatataggattagaaatgacaa 11389705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 380
Target Start/End: Original strand, 2588919 - 2588964
Alignment:
Q  335 gttggatgtgtggtaagactagaccggatatgattataaatgacaa 380  Q
    |||||||||||||||||||||||  ||||| ||||| |||||||||    
T  2588919 gttggatgtgtggtaagactagaagggataggattagaaatgacaa 2588964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 379
Target Start/End: Complemental strand, 31960179 - 31960114
Alignment:
Q  314 tagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgaca 379  Q
    ||||||||||||  |||| | |||||||| ||||||||||||||| ||||| |||||  |||||||    
T  31960179 tagcagagatgaggatgttgcgttggatgagtggtaagactagacaggataggattaggaatgaca 31960114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 369
Target Start/End: Original strand, 54470110 - 54470179
Alignment:
Q  300 aaataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgatt 369  Q
    ||||||||||||| ||  ||||||||  |||| |  ||||||||||||||||||||||  ||||||||||    
T  54470110 aaataaattaagcgtaatagagatgaggatgttgcattggatgtgtggtaagactagatgggatatgatt 54470179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 416
Target Start/End: Original strand, 10208977 - 10209056
Alignment:
Q  336 ttggatgtgtggtaagactagaccggatatgattataaatgacaaatattatagagttgggataccacttatagtagaaaa 416  Q
    ||||||||||||||||||||||  |||||  |||| ||||||| || |||| ||||||||| ||  || ||||||||||||    
T  10208977 ttggatgtgtggtaagactagatgggatagaattagaaatgac-aacattagagagttggggtagaacctatagtagaaaa 10209056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 378
Target Start/End: Original strand, 17900385 - 17900461
Alignment:
Q  302 ataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgac 378  Q
    ||||| ||||| ||||||| ||||  |||| | |||||||||||||||||||||||  |||||  |||| |||||||    
T  17900385 ataaagtaagcgtagcagaaatgaggatgttgcgttggatgtgtggtaagactagatgggataaaattagaaatgac 17900461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 369
Target Start/End: Original strand, 25755237 - 25755289
Alignment:
Q  317 cagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgatt 369  Q
    |||||||||  |||| ||||| ||||||||||||||||||||  |||||||||    
T  25755237 cagagatgagaatgttgtgttagatgtgtggtaagactagacatgatatgatt 25755289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 356
Target Start/End: Original strand, 44359991 - 44360042
Alignment:
Q  304 aaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactag 356  Q
    ||||||||| |||| |||||||| |||| ||||||||||||||||| ||||||    
T  44359991 aaattaagcgtagctgagatgat-atgttgtgttggatgtgtggtaggactag 44360042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 23714654 - 23714579
Alignment:
Q  283 gtaaagaaccaaaatggaaataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagac 358  Q
    |||||||||||| | | ||||||||||||| |||||||||| |  |||| ||||||||||||||||||||||||||    
T  23714654 gtaaagaaccaacacgaaaataaattaagcatagcagagattagaatgttgtgttggatgtgtggtaagactagac 23714579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 24102326 - 24102251
Alignment:
Q  283 gtaaagaaccaaaatggaaataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagac 358  Q
    |||||||||||| | | ||||||||||||| |||||||||| |  |||| ||||||||||||||||||||||||||    
T  24102326 gtaaagaaccaacacgaaaataaattaagcatagcagagattagaatgttgtgttggatgtgtggtaagactagac 24102251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 301 - 379
Target Start/End: Original strand, 7825262 - 7825340
Alignment:
Q  301 aataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgaca 379  Q
    |||||| ||||| |||||||||| |  |||| | |||||||||||||||||||||||| ||||||||||| ||||||||    
T  7825262 aataaagtaagcgtagcagagattaggatgttgcgttggatgtgtggtaagactagactggatatgattagaaatgaca 7825340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 310 - 380
Target Start/End: Original strand, 42092432 - 42092502
Alignment:
Q  310 agcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgacaa 380  Q
    ||||||||||||||||| |||| |  |||||||||| |||||||||||| ||||||||||| |||||||||    
T  42092432 agcttagcagagatgatgatgttgcattggatgtgtagtaagactagacgggatatgattagaaatgacaa 42092502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 380
Target Start/End: Complemental strand, 9556719 - 9556667
Alignment:
Q  328 atgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgacaa 380  Q
    |||| |||||||||||||||||||| ||||| ||||||||||| |||||||||    
T  9556719 atgttgtgttggatgtgtggtaagattagacgggatatgattagaaatgacaa 9556667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 396
Target Start/End: Complemental strand, 9647984 - 9647889
Alignment:
Q  300 aaataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgacaaatattatagagttggg 396  Q
    |||||||||||   ||||||||||||  |||| | |||||||||||||||||||||||   |||| ||||| ||||| | || ||||||||||||||    
T  9647984 aaataaattaaatgtagcagagatgaggatgttgcgttggatgtgtggtaagactagatgtgataagattagaaatgtc-aacattatagagttggg 9647889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 364
Target Start/End: Complemental strand, 4598934 - 4598879
Alignment:
Q  309 aagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggata 364  Q
    |||| ||||||| ||||| |||| | |||||||||||||||||||||||| |||||    
T  4598934 aagcgtagcagaaatgatgatgttgcgttggatgtgtggtaagactagacgggata 4598879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 379
Target Start/End: Original strand, 3865989 - 3866054
Alignment:
Q  314 tagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgaca 379  Q
    ||||||||||||| |||| | |||||||| |||||||||||||||  |||| |||||  |||||||    
T  3865989 tagcagagatgatgatgttgcgttggatgagtggtaagactagacatgataggattaggaatgaca 3866054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 379
Target Start/End: Original strand, 8180697 - 8180762
Alignment:
Q  314 tagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgaca 379  Q
    ||||||||||||  |||| |||||||||| |||||||||||||||  |||| |||||  |||||||    
T  8180697 tagcagagatgaggatgttgtgttggatgagtggtaagactagacatgataggattaggaatgaca 8180762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 358
Target Start/End: Original strand, 45077652 - 45077709
Alignment:
Q  301 aataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagac 358  Q
    |||||| ||||| |||| |||||||  |||| | ||||||||||||||||||||||||    
T  45077652 aataaaataagcatagctgagatgaggatgttgcgttggatgtgtggtaagactagac 45077709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 379
Target Start/End: Original strand, 12734623 - 12734683
Alignment:
Q  319 gagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgaca 379  Q
    |||||||  |||| ||| |||||| ||||||||||||||| ||||| ||||| ||||||||    
T  12734623 gagatgaggatgttgtgctggatgagtggtaagactagacgggataggattagaaatgaca 12734683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 380
Target Start/End: Original strand, 9234973 - 9235052
Alignment:
Q  301 aataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgacaa 380  Q
    |||||| |||||| ||||||||||   |||| |  ||||||||||||||||||||||| ||||| |||||||||||||||    
T  9234973 aataaaataagctgagcagagatggaaatgttgcattggatgtgtggtaagactagacgggataggattataaatgacaa 9235052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 276 - 379
Target Start/End: Complemental strand, 31636317 - 31636218
Alignment:
Q  276 ttgggctgtaaagaaccaaaatggaaataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaat 375  Q
    |||||| |||||||||||| |   |||||||||| || ||||||||||||| ||||    |||||| |||||||||||||||| |||||  |||||||||    
T  31636317 ttgggcggtaaagaaccaacacaaaaataaattatgcgtagcagagatgatgatgt----ttggatttgtggtaagactagactggatagaattataaat 31636222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 416
Target Start/End: Original strand, 32516480 - 32516578
Alignment:
Q  319 gagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgacaa-atattatagagttgggataccacttatagtagaaaa 416  Q
    |||||||| |||| |||||||||||||||||||||||||| |||||   ||| ||||||||| ||   | ||||||||  || ||||||||||||||||    
T  32516480 gagatgatgatgttgtgttggatgtgtggtaagactagacaggatagacttagaaatgacaacattagagagagttggagtaacacttatagtagaaaa 32516578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 357
Target Start/End: Complemental strand, 4026711 - 4026656
Alignment:
Q  302 ataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactaga 357  Q
    ||||||||||||||||||||||||  |||   ||||| ||||||||||||||||||    
T  4026711 ataaattaagcttagcagagatgaatatgctttgttgtatgtgtggtaagactaga 4026656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 358
Target Start/End: Original strand, 27998302 - 27998384
Alignment:
Q  276 ttgggctgtaaagaaccaaaatggaaataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagac 358  Q
    ||||| |||||| |||||| | | || | |||||||| || |||||||||  |||| | ||||||||||||||||||||||||    
T  27998302 ttgggatgtaaaaaaccaacacgaaagtgaattaagcatatcagagatgaggatgttgcgttggatgtgtggtaagactagac 27998384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 380
Target Start/End: Original strand, 6888931 - 6888976
Alignment:
Q  335 gttggatgtgtggtaagactagaccggatatgattataaatgacaa 380  Q
    |||||||||||||||||||||||   |||||||||| |||||||||    
T  6888931 gttggatgtgtggtaagactagatgagatatgattagaaatgacaa 6888976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 376
Target Start/End: Complemental strand, 34194847 - 34194799
Alignment:
Q  328 atgtcgtgttggatgtgtggtaagactagaccggatatgattataaatg 376  Q
    |||| |||||||||||||||||| ||||||| ||||| ||||| |||||    
T  34194847 atgttgtgttggatgtgtggtaaaactagacaggataggattagaaatg 34194799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 301 - 379
Target Start/End: Original strand, 45236760 - 45236838
Alignment:
Q  301 aataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgaca 379  Q
    |||||| ||||| |||| ||||| |  |||| | |||||||||||||||||||||||| ||||||||||| ||||||||    
T  45236760 aataaagtaagcctagccgagattaggatgttgcgttggatgtgtggtaagactagactggatatgattagaaatgaca 45236838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 414
Target Start/End: Original strand, 29919226 - 29919318
Alignment:
Q  319 gagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgacaaatattatagagttgggataccacttatagtagaa 414  Q
    |||||||  |||| ||||||||||||||||| || |||||  |||||||||| ||||| |||||||  |||||||||| || |||||||| |||||    
T  29919226 gagatgacgatgttgtgttggatgtgtggtacgattagacgagatatgattagaaatg-caaatat--tagagttggggtagcacttatactagaa 29919318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 414
Target Start/End: Original strand, 29968379 - 29968471
Alignment:
Q  319 gagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgacaaatattatagagttgggataccacttatagtagaa 414  Q
    |||||||  |||| ||||||||||||||||| || |||||  |||||||||| ||||| |||||||  |||||||||| || |||||||| |||||    
T  29968379 gagatgacgatgttgtgttggatgtgtggtacgattagacgagatatgattagaaatg-caaatat--tagagttggggtagcacttatactagaa 29968471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 380
Target Start/End: Original strand, 49841514 - 49841594
Alignment:
Q  300 aaataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgacaa 380  Q
    ||||||||||||  ||||| ||||||  |||| ||||||||||||| ||||||||||||  | || ||||| |||||||||    
T  49841514 aaataaattaagtgtagcatagatgaggatgttgtgttggatgtgtagtaagactagacgaggtaagattagaaatgacaa 49841594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 370
Target Start/End: Original strand, 19736918 - 19736969
Alignment:
Q  319 gagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgatta 370  Q
    |||||||| |||| |||||||||| ||||||||||||||| ||||| |||||    
T  19736918 gagatgatgatgttgtgttggatgagtggtaagactagacgggatacgatta 19736969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 380
Target Start/End: Original strand, 46568033 - 46568099
Alignment:
Q  314 tagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgacaa 380  Q
    ||||||||||||  |||| |||||||||||||| |||||||||||| |||   |||| |||||||||    
T  46568033 tagcagagatgaggatgttgtgttggatgtgtgttaagactagaccagattgaattagaaatgacaa 46568099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 48777566 - 48777506
Alignment:
Q  328 atgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgacaaatattatag 389  Q
    |||| ||||||||||||||||||||||| |   |||||||||| |||||| |||||||||||    
T  48777566 atgttgtgttggatgtgtggtaagactaaaagagatatgattaaaaatga-aaatattatag 48777506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 348
Target Start/End: Complemental strand, 50632227 - 50632162
Alignment:
Q  283 gtaaagaaccaaaatggaaataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggt 348  Q
    |||||||||||| ||| ||||||||||||| ||| ||||||||  || | |||||||||| |||||    
T  50632227 gtaaagaaccaacatgaaaataaattaagcgtagtagagatgagaattttgtgttggatgcgtggt 50632162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 379
Target Start/End: Complemental strand, 51448074 - 51448009
Alignment:
Q  314 tagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgaca 379  Q
    ||||||||||||  |||| | |||||||| ||||||||||||||| ||||| |||||  |||||||    
T  51448074 tagcagagatgaggatgttgcgttggatgagtggtaagactagacaggataggattaggaatgaca 51448009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 358
Target Start/End: Original strand, 27917461 - 27917533
Alignment:
Q  286 aagaaccaaaatggaaataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagac 358  Q
    ||||||||||| |  ||| || ||||| ||||||||||||  |||| |||||||||| |||||||| ||||||    
T  27917461 aagaaccaaaacgagaatcaagtaagcgtagcagagatgaggatgttgtgttggatgagtggtaagcctagac 27917533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 380
Target Start/End: Original strand, 55244181 - 55244285
Alignment:
Q  276 ttgggctgtaaagaaccaaaatggaaataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaat 375  Q
    |||| |||| ||||||||| ||| ||||||||||||| ||| |  |||||  ||||  || || ||||||||||||||| ||| ||||| |||||  |||    
T  55244181 ttggactgtcaagaaccaacatgaaaataaattaagcgtagtattgatgaggatgttttgatgaatgtgtggtaagacttgacgggataagattagtaat 55244280  T
Q  376 gacaa 380  Q
    |||||    
T  55244281 gacaa 55244285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 380
Target Start/End: Complemental strand, 13172052 - 13171948
Alignment:
Q  276 ttgggctgtaaagaaccaaaatggaaataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaat 375  Q
    |||||| || ||||||||| ||  |||||||||||||  | |||||||||  |||| |  |||||||||| |||||||||||| ||||| ||||| ||||    
T  13172052 ttgggcggttaagaaccaacataaaaataaattaagcacatcagagatgagaatgttgcattggatgtgtagtaagactagacgggataggattagaaat 13171953  T
Q  376 gacaa 380  Q
    |||||    
T  13171952 gacaa 13171948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 380
Target Start/End: Original strand, 36069574 - 36069626
Alignment:
Q  328 atgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgacaa 380  Q
    |||| |||||||||||||||||||||||||| ||||| ||||| ||| |||||    
T  36069574 atgttgtgttggatgtgtggtaagactagacgggataagattagaaacgacaa 36069626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 380
Target Start/End: Original strand, 16917069 - 16917167
Alignment:
Q  282 tgtaaagaaccaaaatggaaataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgacaa 380  Q
    |||||||||| || | | ||||||||||||| ||||||||||||  |||| | ||||  | |||||||||||| | | ||||| ||||| |||||||||    
T  16917069 tgtaaagaacaaacacgaaaataaattaagcatagcagagatgagaatgttgcgttgactttgtggtaagactcggctggataggattaaaaatgacaa 16917167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 416
Target Start/End: Complemental strand, 42493704 - 42493566
Alignment:
Q  279 ggctgtaaagaaccaaaatggaaataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgac 378  Q
    |||||||||||||||| | | ||||||||||||  ||||| ||||||  |||| | ||||| |||||||||||| ||| |  |||  |||| ||||||||    
T  42493704 ggctgtaaagaaccaacaagaaaataaattaagtgtagcaaagatgaggatgttgcgttggttgtgtggtaagattagtcaagattggattgtaaatgac 42493605  T
Q  379 aa-atattatagagttgggataccacttatagtagaaaa 416  Q
    || ||   | ||||||||| || ||| ||||||||||||    
T  42493604 aacattggagagagttggggtaacacctatagtagaaaa 42493566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 380
Target Start/End: Original strand, 32043528 - 32043573
Alignment:
Q  335 gttggatgtgtggtaagactagaccggatatgattataaatgacaa 380  Q
    |||||||||||||||||||||||| |||||  |||| |||||||||    
T  32043528 gttggatgtgtggtaagactagacgggatagaattagaaatgacaa 32043573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 416
Target Start/End: Original strand, 33511302 - 33511378
Alignment:
Q  339 gatgtgtggtaagactagaccggatatgattataaatgacaaatattatagagttgggataccacttatagtagaaaa 416  Q
    ||||||||||||||||| |   |||||||||| |||||| |||||||| ||||||||| || ||| ||| ||||||||    
T  33511302 gatgtgtggtaagactatatgagatatgattagaaatga-aaatattagagagttggggtaacacctatggtagaaaa 33511378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 379
Target Start/End: Complemental strand, 36395315 - 36395250
Alignment:
Q  314 tagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgaca 379  Q
    ||||||||||||  |||| | |||||||| ||||||||||||||| ||||| |||||  |||||||    
T  36395315 tagcagagatgaggatgttgcgttggatgagtggtaagactagacaggataggattaggaatgaca 36395250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 379
Target Start/End: Original strand, 36545064 - 36545129
Alignment:
Q  314 tagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgaca 379  Q
    ||||||||||||  |||| |||||||||| |||||||||||||||  |||| |||||  |||||||    
T  36545064 tagcagagatgaggatgttgtgttggatgagtggtaagactagacatgataggattaggaatgaca 36545129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 379
Target Start/End: Original strand, 39946774 - 39946839
Alignment:
Q  314 tagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgaca 379  Q
    ||||||||||||  |||| | |||||||| |||||||||||||||  |||| |||||| |||||||    
T  39946774 tagcagagatgaggatgttgcgttggatgagtggtaagactagacatgataggattatgaatgaca 39946839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 358
Target Start/End: Original strand, 16351271 - 16351351
Alignment:
Q  278 gggctgtaaagaaccaaaatggaaataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagac 358  Q
    |||| |||||||||||| ||| | |||| |||||| |||  |||||||  |||| | ||||||| ||||||||||||||||    
T  16351271 gggcggtaaagaaccaatatgaacataagttaagcatagatgagatgaagatgttgcgttggatatgtggtaagactagac 16351351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 380
Target Start/End: Complemental strand, 44681382 - 44681338
Alignment:
Q  336 ttggatgtgtggtaagactagaccggatatgattataaatgacaa 380  Q
    |||||||||||||||||||||||  |||| ||||| |||||||||    
T  44681382 ttggatgtgtggtaagactagacgagataagattagaaatgacaa 44681338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 378
Target Start/End: Complemental strand, 33998381 - 33998305
Alignment:
Q  302 ataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgac 378  Q
    ||||||||||| ||||||||||||  |||| | |||||||||||||||||||||||   |||| ||||| |||||||    
T  33998381 ataaattaagcgtagcagagatgaagatgttgcgttggatgtgtggtaagactagatgtgataggattagaaatgac 33998305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 379
Target Start/End: Original strand, 5631749 - 5631800
Alignment:
Q  328 atgtcgtgttggatgtgtggtaagactagaccggatatgattataaatgaca 379  Q
    |||| |||||||||| |||||||||||||||||||||||||||  |||||||    
T  5631749 atgttgtgttggatgagtggtaagactagaccggatatgattaggaatgaca 5631800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 370
Target Start/End: Complemental strand, 6293742 - 6293678
Alignment:
Q  306 attaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagactagaccggatatgatta 370  Q
    ||||||| ||||||||||||  |||| |||||||||||||||||| | |||||  ||||||||||    
T  6293742 attaagcatagcagagatgaggatgttgtgttggatgtgtggtaaaattagactagatatgatta 6293678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 350
Target Start/End: Original strand, 2079237 - 2079286
Alignment:
Q  301 aataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaa 350  Q
    |||||| ||||| |||| |||||||| |||| ||||||||||||||||||    
T  2079237 aataaaataagcgtagcggagatgatgatgttgtgttggatgtgtggtaa 2079286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 380
Target Start/End: Original strand, 9568598 - 9568643
Alignment:
Q  335 gttggatgtgtggtaagactagaccggatatgattataaatgacaa 380  Q
    ||||||||||||||||||||||||  ||||  ||||||||||||||    
T  9568598 gttggatgtgtggtaagactagacatgatagaattataaatgacaa 9568643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 12134279 - 12134227
Alignment:
Q  301 aataaattaagcttagcagagatgatcatgtcgtgttggatgtgtggtaagac 353  Q
    |||||| ||||| ||||||||||||  |||| ||||||||||||||| |||||    
T  12134279 aataaactaagcatagcagagatgagaatgttgtgttggatgtgtggcaagac 12134227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 358
Target Start/End: Original strand, 32755836 - 32755880
Alignment:
Q  314 tagcagagatgatcatgtcgtgttggatgtgtggtaagactagac 358  Q
    ||||||||||||  |||| |||||||||| |||||||||||||||    
T  32755836 tagcagagatgaggatgttgtgttggatgagtggtaagactagac 32755880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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