View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14833_low_11 (Length: 421)
Name: NF14833_low_11
Description: NF14833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14833_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 9857788 - 9858172
Alignment:
| Q |
1 |
aagatgattattatgaagttaattatgaagatgattacggaggatatcaatggaacgttggtttggaagaatatgaagatgaagaggaaatggaggttga |
100 |
Q |
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| T |
9857788 |
aagatgattattatgaagttaattatgaagatgattacggaggatatcaatggaacgttggtttggaagaatatgaagatgaagaggaaatggaggttga |
9857887 |
T |
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| Q |
101 |
agaagtagataatcggttcgttccagcggctaagtcatttattgagggattgaagatggtagaagttgaagaagtagagaaatgtgctatttgttttgaa |
200 |
Q |
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| T |
9857888 |
agaagtagataatcggttcgttccagcggctaagtcatttattgagggattgaagatggtagaagttgaagaagtagagaaatgtgctatttgttttgaa |
9857987 |
T |
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| Q |
201 |
gattttaatgttggtgttagaataccatgttcacacatgtttcatatgacttgtatctctgattggttggtgataggcaattcatgccctttgtgtaggt |
300 |
Q |
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| T |
9857988 |
gattttaatgttggtgttagaataccatgttcacacatgtttcatatgacttgtatctgtgattggttggtgataggcaattcatgccctttgtgtaggt |
9858087 |
T |
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| Q |
301 |
ttcaattgcctacttgatttgtaatgttttattcattctggtttttcagaaaaaccacaaaaactacactgttttattaaggttt |
385 |
Q |
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| T |
9858088 |
ttcaattgcctacttgatttgtaatgtttttttcattctggtttttcagaaaaaccacaaaaactacaacgttttattaaggttt |
9858172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 10 - 105
Target Start/End: Original strand, 9857608 - 9857703
Alignment:
| Q |
10 |
attatgaagttaattatgaagatgattacggaggatatcaatggaacgttggtttggaagaatatgaagatgaagaggaaatggaggttgaagaag |
105 |
Q |
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| T |
9857608 |
attatgaagtttattttgaagatgattaccgaggatatcaatggaacaatggtttggatgaatttgaagatgaagaggaaatggaggttgaagaag |
9857703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 9857701 - 9857753
Alignment:
| Q |
1 |
aagatgattattatgaagttaattatgaagatgattacggaggatatcaatgg |
53 |
Q |
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| T |
9857701 |
aagatgatgagtatgaagtttattgtgaagatgattacggaggatatcaatgg |
9857753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 9862916 - 9862967
Alignment:
| Q |
180 |
aaatgtgctatttgttttgaagattttaatgttggtgttagaataccatgtt |
231 |
Q |
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| T |
9862916 |
aaatgtgctatttgttttgaagattttaaagtttgtcttagtatgccatgtt |
9862967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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