View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14833_low_12 (Length: 417)
Name: NF14833_low_12
Description: NF14833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14833_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 287
Target Start/End: Complemental strand, 6350898 - 6350621
Alignment:
| Q |
14 |
atgaagagaatagaagagggaaaattcattatttcactaactgagtttggtacaatggttaagc--ttagctatcatagactaactgcactctatcataa |
111 |
Q |
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| T |
6350898 |
atgaagagaatagaagagggaaaattcattatttcactaactgagtttggtaaaatgcttaagcgtttacctaccatagactaactgcactctatcataa |
6350799 |
T |
|
| Q |
112 |
ctctctctaactgccataacagaatctaa--ttatgtggcaagttacttagagctatgtcaagttacttgcttctcaagtaatctttcttcttcttccat |
209 |
Q |
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| T |
6350798 |
ctctctctaactgccataacagaatctaagcttatgtggcaagttagttagagctatgtcaagttacttgcttctcaagtaatctttcttcttcttccat |
6350699 |
T |
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| Q |
210 |
tcttaacggttacaacaaaggttaaaaagagagagttggtaataaagaaattccattttctccatcgttttccctctt |
287 |
Q |
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||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6350698 |
tcttaacggttacaacagaggttaaagagagagagttagtaataaagaaattccattttctccatcgttttccctctt |
6350621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 101 - 206
Target Start/End: Complemental strand, 35082093 - 35081986
Alignment:
| Q |
101 |
ctctatcataactctctctaactgccataacagaatctaa--ttatgtggcaagttacttagagctatgtcaagttacttgcttctcaagtaatctttct |
198 |
Q |
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| T |
35082093 |
ctctatcatagttctctctaactgccatagcagaatctaagcttatgtggcaagttagttagagctatgtcaagttacttgcttctcaagtaatctttct |
35081994 |
T |
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| Q |
199 |
tcttcttc |
206 |
Q |
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|||||||| |
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| T |
35081993 |
tcttcttc |
35081986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 35084244 - 35084185
Alignment:
| Q |
18 |
agagaatagaagagggaaaattcattatttcactaactgagtttggtacaatggttaagc |
77 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
35084244 |
agagaatagaagagagaaaattcattatttcactaaccgagtttgttacaatggttaagc |
35084185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 11021744 - 11021815
Alignment:
| Q |
145 |
gtggcaagttacttagagctatgtcaagttacttgcttctcaagtaatctttcttcttcttccattcttaac |
216 |
Q |
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| T |
11021744 |
gtggcaagtttgttagagctatgtcaggttacttgctcctcaagtaatcttccatcttcttccattcttaac |
11021815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 6290214 - 6290254
Alignment:
| Q |
176 |
cttgcttctcaagtaatctttcttcttcttccattcttaac |
216 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||| |
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| T |
6290214 |
cttgctcctcaagtaatcttccttcttcttccattcttaac |
6290254 |
T |
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