View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14833_low_13 (Length: 416)
Name: NF14833_low_13
Description: NF14833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14833_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 12 - 387
Target Start/End: Original strand, 37342503 - 37342875
Alignment:
| Q |
12 |
cattaacaaagagtagagctgctgatattatgagggtacttgatttgaatgctatcaagccaagtcaaagtgaaatcttctcagcagttagaattgtgag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
37342503 |
cattaacaaagagtagagctgctgatattatgagggtacttgatttgaatgctatcaagccaagtcaaagagaaatattctcagcagttagaattgtgag |
37342602 |
T |
|
| Q |
112 |
tgctatagtcaatgctggttttggagtacctcaacttgagtgtaattatttagcatacccttctgagttaagagaaatacgattatgtctacatactaac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37342603 |
tgctatagtcaatgctggttttggagtacctcaacttgagtgtaattatttagcatacccttctgagttaagagaaatacgattatgtctacatactaac |
37342702 |
T |
|
| Q |
212 |
ggaacattcatgcagcggtgtccatataacaacttaaagataggttgtggactaagattaagttggccattacaatgagataaaatgatgtggtaatcat |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37342703 |
ggaacattcatgcagcggtgtccatataacaacttaaagataggttgtggactaacattaagttggccattacaatgagataaaatgatgtggtaatcat |
37342802 |
T |
|
| Q |
312 |
aaatatcattgttatactattcgattattattatcgggatnnnnnnngaacaaaacttctttgctttatgtcatat |
387 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
37342803 |
aaatatcattgtta---ttttcgattattattatcggaacaaaaaaagaacaaaacttctttgctttatgtcatat |
37342875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University