View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14833_low_14 (Length: 399)
Name: NF14833_low_14
Description: NF14833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14833_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 23 - 385
Target Start/End: Complemental strand, 21975493 - 21975131
Alignment:
| Q |
23 |
caaagatgaatgagctcaagaaggttgatcatgctgcatgggaatggctgagaggtcacgaccctaaattatggtgtaagcatgccttctcctactatcc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21975493 |
caaagatgaatgagctcaagaaggttgatcatgctgcatgggaatggctgagaggtcacaacccaaaattatggtgtaagcatgccttctcctattatcc |
21975394 |
T |
|
| Q |
123 |
caagtgtgatgtgctgttgaataatatatctgagtcttttaatgcaacaatcttgttagctagggacaaaccaatactaacaatggctgagtggattaga |
222 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21975393 |
caagtgtgatgtgctgatgaataatatatctgagtcttttaatgcaacaatcttgttagctagggacaaaccaatactaacaatggctgagtggattaga |
21975294 |
T |
|
| Q |
223 |
acttatatcatgaataggataacaacccttagagagaaacttagtaaatgggaacaaaatatcatgcttatgcctaagaaaagactgaatactgagatac |
322 |
Q |
| |
|
|||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21975293 |
acttatattatgaataggatatcaagccttagagagaaacttagtaaatgggaacaaaatatcatgcctatgcctaagaaaagactgaatactgagatac |
21975194 |
T |
|
| Q |
323 |
aaaaggctggtaattggattgcaacttggggaaatgatgaggagtttgaggttgaaatgattg |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
21975193 |
aaaaggctggtaattggattgcaacttggggaaatggtgaggagtttgaggttgaaatgattg |
21975131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 23 - 385
Target Start/End: Original strand, 44478685 - 44479047
Alignment:
| Q |
23 |
caaagatgaatgagctcaagaaggttgatcatgctgcatgggaatggctgagaggtcacgaccctaaattatggtgtaagcatgccttctcctactatcc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44478685 |
caaagatgaatgagctcaagaaggttgatcatgctgcatgggaatggctgagaggtcacaacccaaaattatggtgtaagcatgccttctcctattatcc |
44478784 |
T |
|
| Q |
123 |
caagtgtgatgtgctgttgaataatatatctgagtcttttaatgcaacaatcttgttagctagggacaaaccaatactaacaatggctgagtggattaga |
222 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44478785 |
caagtgtgatgtgctgatgaataatatatctgagtcttttaatgcaacaatcttgttagctagggacaaaccaatactaacaatggctgagtggattaga |
44478884 |
T |
|
| Q |
223 |
acttatatcatgaataggataacaacccttagagagaaacttagtaaatgggaacaaaatatcatgcttatgcctaagaaaagactgaatactgagatac |
322 |
Q |
| |
|
|||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44478885 |
acttatattatgaataggatatcaagccttagagagaaacttagtaaatgggaacaaaatatcatgcctatgcctaagaaaagactgaatactgagatac |
44478984 |
T |
|
| Q |
323 |
aaaaggctggtaattggattgcaacttggggaaatgatgaggagtttgaggttgaaatgattg |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44478985 |
aaaaggctggtaattggattgcaacttggggaaatggtgaggagtttgaggttgaaatgattg |
44479047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 194
Target Start/End: Original strand, 46240698 - 46240798
Alignment:
| Q |
94 |
tggtgtaagcatgccttctcctactatcccaagtgtgatgtgctgttgaataatatatctgagtcttttaatgcaacaatcttgttagctagggacaaac |
193 |
Q |
| |
|
||||||||||||||||| |||||| | || |||||||| ||| ||||||| | |||||||| |||||||| |||||||| | |||||||| |||| |
|
|
| T |
46240698 |
tggtgtaagcatgcctttagctactactctaaatgtgatgttctgatgaataacctgtctgagtcatttaatgctacaatcttagttgctagggataaac |
46240797 |
T |
|
| Q |
194 |
c |
194 |
Q |
| |
|
| |
|
|
| T |
46240798 |
c |
46240798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 85 - 381
Target Start/End: Original strand, 47735733 - 47736029
Alignment:
| Q |
85 |
cctaaattatggtgtaagcatgccttctcctactatcccaagtgtgatgtgctgttgaataatatatctgagtcttttaatgcaacaatcttgttagcta |
184 |
Q |
| |
|
||||||||||||||||||||||| || || || ||||| ||||||||||| | ||||||| || || ||| |||||||||| || || || ||||||| |
|
|
| T |
47735733 |
cctaaattatggtgtaagcatgcattttcatattatcctaagtgtgatgtattaatgaataacatttcagaggcttttaatgctactatattattagcta |
47735832 |
T |
|
| Q |
185 |
gggacaaaccaatactaacaatggctgagtggattagaacttatatcatgaataggataacaacccttagagagaaacttagtaaatgggaacaaaatat |
284 |
Q |
| |
|
| || || ||||| || |||||||| |||||||||||||| || ||||||||||||| ||| ||||| | || | ||||| ||| || |||| |
|
|
| T |
47735833 |
gagataagccaatcctcacaatggcagagtggattagaacatacctcatgaataggatgtcaaaacttaggaataagttaagtaactggcaaggtgatat |
47735932 |
T |
|
| Q |
285 |
catgcttatgcctaagaaaagactgaatactgagatacaaaaggctggtaattggattgcaacttggggaaatgatgaggagtttgaggttgaaatg |
381 |
Q |
| |
|
||||| |||||| | ||||||| |||| |||||||| |||| |||| || | ||| ||||||||||||| | ||| |||||||||||||||||| |
|
|
| T |
47735933 |
catgcctatgccaaggaaaagattgaacactgagattcaaagatctggaaactagatagcaacttggggaataggtgatgagtttgaggttgaaatg |
47736029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 242
Target Start/End: Complemental strand, 13047681 - 13047587
Alignment:
| Q |
148 |
atatctgagtcttttaatgcaacaatcttgttagctagggacaaaccaatactaacaatggctgagtggattagaacttatatcatgaataggat |
242 |
Q |
| |
|
|||||||| ||||||||| ||||||| || | ||||| |||||||||||||| || |||||||| ||||||||||| ||| | ||||||||||| |
|
|
| T |
13047681 |
atatctgaatcttttaattcaacaatattagttgctagagacaaaccaatacttaccatggctgaatggattagaacatatttaatgaataggat |
13047587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 82 - 242
Target Start/End: Complemental strand, 34797077 - 34796917
Alignment:
| Q |
82 |
gaccctaaattatggtgtaagcatgccttctcctactatcccaagtgtgatgtgctgttgaataatatatctgagtcttttaatgcaacaatcttgttag |
181 |
Q |
| |
|
||||||||| | |||||||||||||| | ||||| ||||| || |||||||| | |||| || |||| ||| | |||||| ||||||| || | | |
|
|
| T |
34797077 |
gaccctaaaatgtggtgtaagcatgctatttcctattatcctaaatgtgatgtcttaatgaacaacatatttgaagcatttaattcaacaatattagttg |
34796978 |
T |
|
| Q |
182 |
ctagggacaaaccaatactaacaatggctgagtggattagaacttatatcatgaataggat |
242 |
Q |
| |
|
|||| |||||||||||||| || |||||||| || |||||||| ||| | ||||||||||| |
|
|
| T |
34796977 |
ctagagacaaaccaatacttaccatggctgaatgaattagaacatatttaatgaataggat |
34796917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 238
Target Start/End: Original strand, 37876048 - 37876192
Alignment:
| Q |
94 |
tggtgtaagcatgccttctcctactatcccaagtgtgatgtgctgttgaataatatatctgagtcttttaatgcaacaatcttgttagctagggacaaac |
193 |
Q |
| |
|
|||||||||||||| || ||||||| | || |||||||| | |||||||||| || |||||||||||| | |||||| | | ||||| ||||||| |
|
|
| T |
37876048 |
tggtgtaagcatgcatttacctactactctaaatgtgatgttttaatgaataatatctcagagtcttttaattccacaatcctacttgctagagacaaac |
37876147 |
T |
|
| Q |
194 |
caatactaacaatggctgagtggattagaacttatatcatgaata |
238 |
Q |
| |
|
|||| || | ||| ||| ||||||||||||||| | ||||||| |
|
|
| T |
37876148 |
caatcatatctatgtgtgaatggattagaacttatttgatgaata |
37876192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 85 - 381
Target Start/End: Complemental strand, 41770989 - 41770693
Alignment:
| Q |
85 |
cctaaattatggtgtaagcatgccttctcctactatcccaagtgtgatgtgctgttgaataatatatctgagtcttttaatgcaacaatcttgttagcta |
184 |
Q |
| |
|
||||||||||||||||||||||| || || || ||||| ||||||||||| | ||||||| || || ||| | |||||||| || || || ||||||| |
|
|
| T |
41770989 |
cctaaattatggtgtaagcatgcattttcatattatcctaagtgtgatgtattaatgaataacatttcagaggcatttaatgctactatattattagcta |
41770890 |
T |
|
| Q |
185 |
gggacaaaccaatactaacaatggctgagtggattagaacttatatcatgaataggataacaacccttagagagaaacttagtaaatgggaacaaaatat |
284 |
Q |
| |
|
| || || ||||| || |||||||| ||||||||||||| || ||||||||||||| ||| ||||| | || | ||||| ||| || |||| |
|
|
| T |
41770889 |
gagataagccaatcctcacaatggcaaagtggattagaacatacctcatgaataggatgtcaaaacttaggaataagttaagtaactggcaaggtgatat |
41770790 |
T |
|
| Q |
285 |
catgcttatgcctaagaaaagactgaatactgagatacaaaaggctggtaattggattgcaacttggggaaatgatgaggagtttgaggttgaaatg |
381 |
Q |
| |
|
||||| |||||| | ||||||| |||| |||||||| || || |||| || ||||| ||||| ||||||| | ||| |||||||||||||||||| |
|
|
| T |
41770789 |
catgcctatgccaaggaaaagattgaacactgagattcagaaatctggaaactggatagcaacatggggaataggtgatgagtttgaggttgaaatg |
41770693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 242
Target Start/End: Original strand, 7308915 - 7309075
Alignment:
| Q |
82 |
gaccctaaattatggtgtaagcatgccttctcctactatcccaagtgtgatgtgctgttgaataatatatctgagtcttttaatgcaacaatcttgttag |
181 |
Q |
| |
|
||||||||| | |||||||||||||| | ||||| ||||| || |||||||| | |||| || |||||||| | |||||| ||||||| || | | |
|
|
| T |
7308915 |
gaccctaaaatgtggtgtaagcatgctatttcctattatcctaaatgtgatgtcttaatgaacaacatatctgaagcatttaattcaacaatattagttg |
7309014 |
T |
|
| Q |
182 |
ctagggacaaaccaatactaacaatggctgagtggattagaacttatatcatgaataggat |
242 |
Q |
| |
|
|||| |||||||||||||| || |||||||| ||||||||||| ||| | ||||||||||| |
|
|
| T |
7309015 |
ctagagacaaaccaatacttaccatggctgaatggattagaacatatttaatgaataggat |
7309075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 3920880 - 3920800
Alignment:
| Q |
93 |
atggtgtaagcatgccttctcctactatcccaagtgtgatgtgctgttgaataatatatctgagtcttttaatgcaacaat |
173 |
Q |
| |
|
||||||||||||||| || ||| ||| | ||||||||||| ||| ||||||| |||||||| || |||||||| ||||| |
|
|
| T |
3920880 |
atggtgtaagcatgcttttaccttttattctaagtgtgatgtactgatgaataacatatctgaatcctttaatgccacaat |
3920800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 85 - 381
Target Start/End: Complemental strand, 13649461 - 13649165
Alignment:
| Q |
85 |
cctaaattatggtgtaagcatgccttctcctactatcccaagtgtgatgtgctgttgaataatatatctgagtcttttaatgcaacaatcttgttagcta |
184 |
Q |
| |
|
||||||||||||||||||||||| || || || ||||| ||||||||||| | ||||||| || || ||| |||||||||| || || || ||||||| |
|
|
| T |
13649461 |
cctaaattatggtgtaagcatgcattttcatattatcctaagtgtgatgtattaatgaataacatttcagaggcttttaatgctactatattattagcta |
13649362 |
T |
|
| Q |
185 |
gggacaaaccaatactaacaatggctgagtggattagaacttatatcatgaataggataacaacccttagagagaaacttagtaaatgggaacaaaatat |
284 |
Q |
| |
|
| || || ||| | || |||||||| ||||||||||||| || ||||||||||||| ||| ||||| | || | ||||| ||| || |||| |
|
|
| T |
13649361 |
gagataagccattcctcacaatggcatagtggattagaacatacctcatgaataggatgtcaaaacttaggaataagttaagtaactggcaaggtgatat |
13649262 |
T |
|
| Q |
285 |
catgcttatgcctaagaaaagactgaatactgagatacaaaaggctggtaattggattgcaacttggggaaatgatgaggagtttgaggttgaaatg |
381 |
Q |
| |
|
||||| |||||| | ||||||| |||| |||||||| |||| |||| || | ||| ||||||||||||| | ||| |||||||||||||||||| |
|
|
| T |
13649261 |
catgcctatgccaaggaaaagattgaacactgagattcaaagatctggaaacttgatagcaacttggggaataggtgatgagtttgaggttgaaatg |
13649165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 85 - 381
Target Start/End: Original strand, 35599189 - 35599485
Alignment:
| Q |
85 |
cctaaattatggtgtaagcatgccttctcctactatcccaagtgtgatgtgctgttgaataatatatctgagtcttttaatgcaacaatcttgttagcta |
184 |
Q |
| |
|
|||||||||||||| |||||||| || || || ||||| ||||||||||| | ||||||| || || ||| | |||||||| || || || ||||||| |
|
|
| T |
35599189 |
cctaaattatggtgcaagcatgcattttcatattatcctaagtgtgatgtattaatgaataacatttcagaggcatttaatgctactatattattagcta |
35599288 |
T |
|
| Q |
185 |
gggacaaaccaatactaacaatggctgagtggattagaacttatatcatgaataggataacaacccttagagagaaacttagtaaatgggaacaaaatat |
284 |
Q |
| |
|
| || || ||| | || |||||||| ||||||||||||| || ||||||||||||| ||| ||||| | || | ||||| ||| || |||| |
|
|
| T |
35599289 |
gagataagccagtcctcacaatggcaaagtggattagaacatacctcatgaataggatgtcaaaacttaggaataagttaagtaactggcaaggtgatat |
35599388 |
T |
|
| Q |
285 |
catgcttatgcctaagaaaagactgaatactgagatacaaaaggctggtaattggattgcaacttggggaaatgatgaggagtttgaggttgaaatg |
381 |
Q |
| |
|
||||| |||||| | ||||||| |||| |||||||| || || |||| || ||||| ||||| ||||||| | ||| |||||||||||||||||| |
|
|
| T |
35599389 |
catgcctatgccaaggaaaagattgaacactgagattcagaaatctggaaactggatagcaacatggggaataggtgatgagtttgaggttgaaatg |
35599485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 195
Target Start/End: Complemental strand, 4496910 - 4496809
Alignment:
| Q |
94 |
tggtgtaagcatgccttctcctactatcccaagtgtgatgtgctgttgaataatatatctgagtcttttaatgcaacaatcttgttagctagggacaaac |
193 |
Q |
| |
|
|||||||||||||| || || |||||||| || |||||||| || |||| || || |||| || |||||||||||||| || |||||||||| |||| |
|
|
| T |
4496910 |
tggtgtaagcatgctttttcttactatcctaaatgtgatgtactaatgaacaacctaactgaatcctttaatgcaacaatattagtagctagggataaac |
4496811 |
T |
|
| Q |
194 |
ca |
195 |
Q |
| |
|
|| |
|
|
| T |
4496810 |
ca |
4496809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 82 - 242
Target Start/End: Complemental strand, 22370519 - 22370359
Alignment:
| Q |
82 |
gaccctaaattatggtgtaagcatgccttctcctactatcccaagtgtgatgtgctgttgaataatatatctgagtcttttaatgcaacaatcttgttag |
181 |
Q |
| |
|
||||||||| | |||||||||||||| | || || || || || |||||||| | |||| || |||||||| | |||||| ||||||| ||| | | |
|
|
| T |
22370519 |
gaccctaaaatgtggtgtaagcatgctatttcttattaccctaaatgtgatgtcttaatgaacaacatatctgaagcctttaattcaacaatattggttg |
22370420 |
T |
|
| Q |
182 |
ctagggacaaaccaatactaacaatggctgagtggattagaacttatatcatgaataggat |
242 |
Q |
| |
|
|||| |||||||||||||| || |||||||| ||||||||||| ||| | ||||||||||| |
|
|
| T |
22370419 |
ctagagacaaaccaatactgaccatggctgaatggattagaacatatttaatgaataggat |
22370359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 51016697 - 51016776
Alignment:
| Q |
160 |
tttaatgcaacaatcttgttagctagggacaaaccaatactaacaatggctgagtggattagaacttatatcatgaatag |
239 |
Q |
| |
|
|||||| ||||||| || | ||||| |||||||||||||| || |||||||| ||||||||||| ||| | |||||||| |
|
|
| T |
51016697 |
tttaattcaacaatattagttgctagagacaaaccaatacttaccatggctgaatggattagaacatatttaatgaatag |
51016776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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