View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14833_low_15 (Length: 356)
Name: NF14833_low_15
Description: NF14833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14833_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 10 - 337
Target Start/End: Original strand, 51680280 - 51680607
Alignment:
| Q |
10 |
gaagcaaaggggagaaggaagaaggaatgggataggatgagcttttacaaaattaccctctgcttaaatgttgaaatgttaaaattattcatggtgttgc |
109 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
51680280 |
gaagaaaaagggagaaggaagaaggaatgggataggatgagcttttacaaaattaccctctgcttaaatgttgaaatgttaaaattactcatggtgctgc |
51680379 |
T |
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| Q |
110 |
atttgtgtctcataatttgtgtttggttatcattcctgtttttcctttctgcttcacaaacactccagttttaacggtagcaatttagtagtgtacatct |
209 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
51680380 |
atttgtgtctgataatttgtgtttggttatcattcctgtttttcctttctgcttcacaaacactccagttttaactgtagcaatttagtagtgtacatct |
51680479 |
T |
|
| Q |
210 |
ttttcgcactgccctgcatgatgattattttcatgcgttattgtggtgataacttataaaggtttcatatgcgatgactgaactacatcaatcgttcagg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51680480 |
ttttcgcactgccctgcatgatgattattttcatgcgttattgtggtgataacttataaaggtttcatatgcgatgactgaactacatcaatcgttcagg |
51680579 |
T |
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| Q |
310 |
tgttattgtaaataaataatatattaac |
337 |
Q |
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| T |
51680580 |
tgttattgtaaataaataatatattaac |
51680607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 41405845 - 41405968
Alignment:
| Q |
20 |
ggagaaggaagaaggaatgggataggatgagcttttacaaaattaccctctgcttaaatgttgaaatgttaaaattattcatggtgttgcatttgtgtct |
119 |
Q |
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| T |
41405845 |
ggagaaggaagaaggaatgggataggatgagcttttacaaaattaccctctgcttaaatgttgaaatgtcaaaattacccatggtgttgtatttgtgtct |
41405944 |
T |
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| Q |
120 |
cataatttgtgtttggttatcatt |
143 |
Q |
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| T |
41405945 |
caaaatttgtgtttggttatcatt |
41405968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 24763671 - 24763537
Alignment:
| Q |
9 |
agaagcaaaggggagaaggaagaaggaatgggataggatgagcttttacaaaattaccctctgcttaaatgttgaaatgttaaaattattcatggtgttg |
108 |
Q |
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| T |
24763671 |
agaaggaaaagggagaaggaagaaggaatagggtacggtgagcttttacgaaattatcctttgctttagtgttgaaatgtcaaaattatccatggtgttg |
24763572 |
T |
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| Q |
109 |
catttgtgtctcataatttgtgtttggttatcatt |
143 |
Q |
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| T |
24763571 |
tatttgtgtctaataatttgtgtttggttatcatt |
24763537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 4093036 - 4092902
Alignment:
| Q |
9 |
agaagcaaaggggagaaggaagaaggaatgggataggatgagcttttacaaaattaccctctgcttaaatgttgaaatgttaaaattattcatggtgttg |
108 |
Q |
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| T |
4093036 |
agaagaaaaagggagaaggaagaaggaataagataggatgagcttttacaaaattacccactgctttaattttgaaatgtcaaaattgcccatggtgttg |
4092937 |
T |
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| Q |
109 |
catttgtgtctcataatttgtgtttggttatcatt |
143 |
Q |
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|||||||| | ||||||||||||||||||||||| |
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| T |
4092936 |
tatttgtgtttgataatttgtgtttggttatcatt |
4092902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 48071762 - 48071655
Alignment:
| Q |
39 |
ggataggatgagcttttacaaaattaccctctgcttaaatgttgaaatgttaaaattattcatggtgttgcatttgtgtctcataatttgtgtttggtta |
138 |
Q |
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| T |
48071762 |
ggataagatgggtttttacaaaattgccc-ctactttaatgttgaaatgtcaaaattatccatggtgttgtatttatgtttgataacttgtgttcagtta |
48071664 |
T |
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| Q |
139 |
tcattcctg |
147 |
Q |
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||||||||| |
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| T |
48071663 |
tcattcctg |
48071655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 48073768 - 48073837
Alignment:
| Q |
80 |
ttgaaatgttaaaattattcatggtgttgcatttgtgtctcataatttgtgtttggttatcattcctgtt |
149 |
Q |
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| T |
48073768 |
ttgaaatgtgaaaattatctatggtattgtatttatgtctgataacttgtgttcagttatcattcctgtt |
48073837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 11073985 - 11073888
Alignment:
| Q |
50 |
gcttttacaaaattaccctctgcttaaatgttgaaatgttaaaattattcatggtgttgcatttgtgtctcataatttgtgtttggttatcattcctgt |
148 |
Q |
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| T |
11073985 |
gcttttacaaaattacc-tcttctttgatgttgcaatgtcaaaattgcccatagtgttgtatttgtgtcaaataatttgtgtttggttatcatttctgt |
11073888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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