View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14833_low_2 (Length: 625)
Name: NF14833_low_2
Description: NF14833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14833_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 301 - 610
Target Start/End: Original strand, 26239250 - 26239559
Alignment:
| Q |
301 |
taaatgttgtgttattgttgacgttggcaaatgggttgttatatttttaaataaaagtaataaatcgtaacccttgatcttttactgataggaaaacaga |
400 |
Q |
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| T |
26239250 |
taaatattgtgttattgttgacgttggcaaatgggttgttatatttttaaataaaagtaataaatcgtaaaccttgatcttttactgataggaaaacaga |
26239349 |
T |
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| Q |
401 |
attgcagcttttatatagtcggagatataagcacccgagcctcattagcaaacataatccaaatgaggtggtgacgacgcggaacctctaaccctagatt |
500 |
Q |
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| T |
26239350 |
attgcagcttttatatagtcggagatataagcacccgagcctcattagcaaacataatccaaatgaggtggtgacgacgcggaacctctaaccctagatt |
26239449 |
T |
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| Q |
501 |
agcagttttcttcttctaggagattcatgcaaacactctaacgattaaaaatgtgttaaatacgcgaggtgttagggttgaaagtgtgtatcatgaagca |
600 |
Q |
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| T |
26239450 |
aacagttttcttcttttaggagattcatgcaaacactctaacgattaagaatgtgttaaatacgcgaggtgttagggttgaaagtgtgtatcatgaagca |
26239549 |
T |
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| Q |
601 |
gctacaagtt |
610 |
Q |
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| T |
26239550 |
gctacaagtt |
26239559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 303
Target Start/End: Original strand, 26238904 - 26239191
Alignment:
| Q |
13 |
aacataggtgtttatttatttaatttttgtccgtagataagatgataaatatcaattaaaaatcacatacacttgtaaaattttgagtttaaactatgat |
112 |
Q |
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| T |
26238904 |
aacataggtgtttatttatttaatttttgtccgtagataagatgataaatatcaattaaaaatcacatacacttgtaaaattttgagtttaaactatgat |
26239003 |
T |
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| Q |
113 |
gaaaatgttcaacttaataataatatttgcattccttacaaaaatttgatatatgtattgttagttgagtggaagtttacattacacaaaaaactatagg |
212 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26239004 |
gaaaatgatcaacttaat---aatatttgcattccttacaaaaatttgatatatgtattgttagttgagtggaagtttacattacacaaaaaactatagg |
26239100 |
T |
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| Q |
213 |
agaaataaatcgtggccttagaaaacaattttaatttaaaactatttcatctttatagttttatacatttcttattcttgtgtatgagtaa |
303 |
Q |
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| T |
26239101 |
agaaataaatcgtggccttagaaaacaattttaatttaaaactatttcatctttatagttttatacatttcttattcttgtgtatgagtaa |
26239191 |
T |
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