View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14833_low_24 (Length: 293)
Name: NF14833_low_24
Description: NF14833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14833_low_24 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 7 - 293
Target Start/End: Complemental strand, 6350356 - 6350072
Alignment:
| Q |
7 |
tttcttatcactctaacgtttgtagtgattatacctctagaggtcacttgacacatcttatagaaagcttaccgcgaccacaaagttgtttggtttgggt |
106 |
Q |
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| T |
6350356 |
tttcttatcactctaacgtttgtagtgattatacctctagaggtcacttgacacatcttatagaaagcttaccgcgaccacaaagttgtttggtttgggt |
6350257 |
T |
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| Q |
107 |
gatttgatatggtttcaagctattttcacatagagaaaattcttcaatttgttgcaaagatcaaacaagcacaaactcacccaaagactcacaaaattac |
206 |
Q |
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| T |
6350256 |
gatttgatatggtttcaagctattttcacatagagaaaattcttcaatttgttgcaaagatcaaacaagcacaaactcacccaaagactcacaaaattac |
6350157 |
T |
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| Q |
207 |
tcagggacactaaaaactttgtatgactaattatcatcacataccaaaccttatgtcgacgtgtaaagaaagagagaaattaaatca |
293 |
Q |
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| T |
6350156 |
tcagggacactaaaaactttgtatgactaattatcatcacataccaaaccttatgtcgacgtggaaagaaa--gagaaattaaatca |
6350072 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 8987276 - 8987244
Alignment:
| Q |
81 |
cgaccacaaagttgtttggtttgggtgatttga |
113 |
Q |
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| T |
8987276 |
cgaccacatagttgtttggtttgggtgatttga |
8987244 |
T |
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