View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14833_low_3 (Length: 553)
Name: NF14833_low_3
Description: NF14833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14833_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 301 - 534
Target Start/End: Original strand, 6170977 - 6171210
Alignment:
| Q |
301 |
cgaagagatataaactccaacgtgcaaaggttaaagagggagaccgcaacttaaaaacaccaatagcaaaaactcgtgagtaccagagcaagacataacc |
400 |
Q |
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| T |
6170977 |
cgaagagatataaactccaacgtgcaaaggttaaagagggagaccgcaacttaaaaacaccaatagcaaaaactcgtgagtaccagagcaagacataacc |
6171076 |
T |
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| Q |
401 |
agtagggcaacgaaaaccaaacacccgacaaacaaacacaacctaaatcggccgttgctcaagctcaaccgtcaccaatttcgcaaaaaagatcaattca |
500 |
Q |
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| T |
6171077 |
agtagggcaacgaaaaccaaacacccgacaaacaaacacaacctaaatcggtcgttgctcaagctcaaccgtcaccaatttcgcaaaaaagatcaattca |
6171176 |
T |
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| Q |
501 |
ttcagggacatttaaatggactacacgaccaaat |
534 |
Q |
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| T |
6171177 |
ttcagggacatttaaatggactacacgaccaaat |
6171210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 6170687 - 6170904
Alignment:
| Q |
11 |
gtgaaatgaaggagactaagctcaagcaaataatcaatttaatgtgacatctttttaatttttaaaatgcaagacacgggttgtggcaaattgaactttg |
110 |
Q |
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| T |
6170687 |
gtgaaatgaaggagactaagctcaagcaaataatcaatttaatgtgacatctttttaatttttaaaatgcaagacacgggttgtggcaaattgaactttg |
6170786 |
T |
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| Q |
111 |
tagacacaaaaaatgactataaaggtggggtggttcaatcaaaaacttcggtggaaatttgtcattagccaagtgagtagatcatatgcatttttttaat |
210 |
Q |
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| T |
6170787 |
tagacacaaaaaatgactataaaggtggggtggttcaatcaaaaacttcggtggaaatttgtcattagccaagtgagtagatcatatgcatttttttaat |
6170886 |
T |
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| Q |
211 |
tataaacaaaatatacat |
228 |
Q |
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| T |
6170887 |
tataaacaaaatatacat |
6170904 |
T |
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