View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14833_low_5 (Length: 474)
Name: NF14833_low_5
Description: NF14833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14833_low_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Original strand, 48956355 - 48956817
Alignment:
| Q |
1 |
ctttacagttttttgtccattccactgactcaaataaatagtgaaacataacacaccaaatcactttcttaaacataattcatcactaattgatgtacat |
100 |
Q |
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| T |
48956355 |
ctttacagttttttgtccattccactgactcaaataaatagtgaaacataacacaccaaatcactttcttaaacataattcatcactaattgatgtgcat |
48956454 |
T |
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| Q |
101 |
tatttatttattatgcttatatataatcaccacgtcgctctcattctctctttttgaataagtcaagtcaactatgaatacagttaatgagtgagtgctc |
200 |
Q |
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| T |
48956455 |
tatttatt----atgcttatatataatcaccacgtcgctctcattctctctttttgaataagtcaagtcaactatgaatacagttaatgagtgagtgctc |
48956550 |
T |
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| Q |
201 |
ctttaatttccttttcttttggagaatgaatgagtattattgagtgggg--ggcggagtaggtatacgaagaaggaggatttcacggctatagttacgtg |
298 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48956551 |
cttt-----ccttttcttttggagaatgaatgagtattattgagtggggggggcggagtaggtatacgaagaaggaggatttcacggctatagttacgtg |
48956645 |
T |
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| Q |
299 |
agtgagtcacattcaattgtaaccgttgatagagaggaggatttcatgccccgttgccattagatctgtaacatttgttatatatgggaccatatacaat |
398 |
Q |
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| T |
48956646 |
agtgagtcacattcaattgtaaccgttgatggagaggaggatttcatgccccgttgccattagatctgtaacatttgttatatatgggaccatatacaat |
48956745 |
T |
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| Q |
399 |
acatgaatgaatgaacatacatgcggatgctgttgtgtttattgggagtggtaccacagaacacgttaaaactcaa |
474 |
Q |
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| T |
48956746 |
ac----atgaatgaacatacatgcggatgctgttgtgtttattgggagtggtaccacagaacacgttaaaattcaa |
48956817 |
T |
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