View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14833_low_7 (Length: 453)
Name: NF14833_low_7
Description: NF14833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14833_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 51827007 - 51827157
Alignment:
| Q |
1 |
gaaaccgtgcagaaagaatgaaaaataatgag---tataaaaaattgaggcagattggcctattgtcacggtaagatagatcactcaaggaaaaaacgct |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
51827007 |
gaaaccgtgcagaaagaatgaaaaataatgaggagtataaaaaattgaggcagattggcctattgtcacggtaagatagattactcaaggaaaaaacgct |
51827106 |
T |
|
| Q |
98 |
attgtgaatacaatttatgattagagatcaaattcatacttatggaaatag |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
51827107 |
attgtgaatacaatttatgattagagatcaaattcatactaatggaaatag |
51827157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 235 - 381
Target Start/End: Original strand, 51827264 - 51827417
Alignment:
| Q |
235 |
ttgaatttaagaatgacaaaaattagttacaggaatatttcaaatcataattacaaccttagctaatagaactaagttagatctattacatagt------ |
328 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
51827264 |
ttgaatttaagaatgacaaaaattaattacaggaataattcaaatcataattacaactttagctaatagaactaagttagatctattacatagtcttagc |
51827363 |
T |
|
| Q |
329 |
-cttaggaactgcacaaattgtaaaatgagaactagctaattaagaggccgatc |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51827364 |
ccttaggaactgcacaaattgtaaaatgagaactagctaattaagaggccgatc |
51827417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 322
Target Start/End: Original strand, 51824087 - 51824159
Alignment:
| Q |
252 |
aaaaattagttacaggaa-tatttcaaatcataattaca-accttagctaatagaactaagttagatctatta |
322 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||| ||| |||||||||| ||| | ||||||||||| |
|
|
| T |
51824087 |
aaaaattaattacaggaaatatttcaaatcataattacacccctaagctaatagacctaggatagatctatta |
51824159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 437
Target Start/End: Original strand, 51827450 - 51827479
Alignment:
| Q |
408 |
ggttaaactatttaacactgcgatttctct |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
51827450 |
ggttaaactatttaacactgcgatttctct |
51827479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University