View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14834_high_3 (Length: 349)
Name: NF14834_high_3
Description: NF14834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14834_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 37058795 - 37059127
Alignment:
| Q |
1 |
aaaaattatctatcttacataagattttattaattgtaatttnnnnnnnttaagttctgcagaaacaacacttatctaaattgttaacattatcctatga |
100 |
Q |
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| T |
37058795 |
aaaaattatctatcttacataagattttattaattgtaatttaaaaaaattaagttctgcagaaacaacacttatctaaattgttaacattatcctatga |
37058894 |
T |
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| Q |
101 |
gaaataaaagcatttggaaaataatcaattatttttacataattaagtatgttaattgttgtaaaagtttttaactgtataatttattttaaaatgttca |
200 |
Q |
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| T |
37058895 |
gaaagaaaagcatttggaaaataatcaattctttttacataattaagtatgttaattgttgtaaaagtttttaactgtataatttattttaaaatgttca |
37058994 |
T |
|
| Q |
201 |
gttcagtaaataaatataatccatcaatttttgagtttttgttatgtcttaatgaacgttcaatattaagacaagaatattttaacttttcattaactaa |
300 |
Q |
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| T |
37058995 |
gttcagtaaataaatataatccatcaatttttgagtttttgttatgtcttaatgaacgttcaatattaagacaagaatattttaacttttcattaactaa |
37059094 |
T |
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| Q |
301 |
tgactttaatttctcaatgctaaataaaaataa |
333 |
Q |
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| T |
37059095 |
tgactttaatttctcaatgctaaataaaaataa |
37059127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 1151890 - 1151984
Alignment:
| Q |
135 |
ttacataattaagtatgttaattgt-tgtaaaagtttttaactgtataatttattttaaaatgttcagttcagtaaataaatataatccatcaat |
228 |
Q |
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| T |
1151890 |
ttacataattaagtatgtcgattgggtgtatcattttttacttgtataacttctcttaagatgtttagttcagtaaataaatataatccatcaat |
1151984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 34569044 - 34568992
Alignment:
| Q |
176 |
tgtataatttattttaaaatgttcagttcagtaaataaatataatccatcaat |
228 |
Q |
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|||||||||| | |||||||||| ||||| |||||||||| |||||||||||| |
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| T |
34569044 |
tgtataatttctcttaaaatgtttagttctgtaaataaatctaatccatcaat |
34568992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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