View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14834_low_1 (Length: 560)

Name: NF14834_low_1
Description: NF14834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14834_low_1
NF14834_low_1
[»] chr2 (17 HSPs)
chr2 (18-340)||(33615069-33615389)
chr2 (405-543)||(33615454-33615592)
chr2 (214-284)||(11386321-11386391)
chr2 (244-284)||(1862683-1862723)
chr2 (241-284)||(25089943-25089986)
chr2 (214-276)||(5713261-5713323)
chr2 (219-284)||(10459283-10459348)
chr2 (228-284)||(944797-944853)
chr2 (238-281)||(43398869-43398912)
chr2 (218-284)||(16180463-16180529)
chr2 (246-284)||(16564420-16564458)
chr2 (218-280)||(19924320-19924382)
chr2 (219-273)||(35693935-35693989)
chr2 (238-284)||(38935391-38935437)
chr2 (227-275)||(4592464-4592512)
chr2 (244-284)||(7932785-7932825)
chr2 (219-279)||(31469088-31469148)
[»] chr1 (7 HSPs)
chr1 (214-284)||(5056322-5056392)
chr1 (224-284)||(3694015-3694075)
chr1 (214-284)||(30693347-30693417)
chr1 (214-284)||(15343234-15343304)
chr1 (225-282)||(10498356-10498413)
chr1 (219-280)||(47543616-47543677)
chr1 (244-284)||(37918942-37918982)
[»] chr4 (9 HSPs)
chr4 (228-281)||(4423175-4423228)
chr4 (137-206)||(12291446-12291514)
chr4 (218-281)||(4479607-4479670)
chr4 (235-281)||(5496882-5496928)
chr4 (238-284)||(12276856-12276902)
chr4 (239-284)||(1083797-1083842)
chr4 (228-281)||(24788662-24788715)
chr4 (228-281)||(24819545-24819598)
chr4 (214-271)||(55762905-55762962)
[»] chr5 (16 HSPs)
chr5 (240-284)||(12619657-12619701)
chr5 (218-284)||(30293392-30293458)
chr5 (219-285)||(33498378-33498444)
chr5 (227-280)||(968314-968367)
chr5 (232-281)||(17858198-17858247)
chr5 (137-208)||(1592022-1592093)
chr5 (218-281)||(5727732-5727794)
chr5 (214-284)||(2424466-2424536)
chr5 (227-281)||(15119322-15119376)
chr5 (137-225)||(9050934-9051019)
chr5 (238-286)||(11600696-11600742)
chr5 (228-281)||(28023954-28024007)
chr5 (179-208)||(42332361-42332390)
chr5 (137-208)||(1584677-1584749)
chr5 (137-177)||(11487628-11487668)
chr5 (217-281)||(26730085-26730149)
[»] chr7 (7 HSPs)
chr7 (218-273)||(30794457-30794512)
chr7 (219-281)||(23971216-23971278)
chr7 (145-207)||(13640854-13640916)
chr7 (219-284)||(18732018-18732083)
chr7 (241-274)||(37698859-37698892)
chr7 (238-282)||(5026176-5026220)
chr7 (244-284)||(36035288-36035328)
[»] chr6 (6 HSPs)
chr6 (218-284)||(35003775-35003841)
chr6 (218-273)||(8437813-8437868)
chr6 (238-281)||(33822324-33822367)
chr6 (219-284)||(2282415-2282480)
chr6 (219-284)||(31323831-31323896)
chr6 (244-284)||(30531220-30531260)
[»] chr8 (9 HSPs)
chr8 (246-281)||(37627941-37627976)
chr8 (214-284)||(9548077-9548147)
chr8 (238-284)||(13210000-13210046)
chr8 (218-284)||(33557803-33557869)
chr8 (228-285)||(11196244-11196301)
chr8 (238-284)||(8777805-8777851)
chr8 (219-285)||(15114634-15114700)
chr8 (219-284)||(12788243-12788308)
chr8 (140-208)||(28622350-28622418)
[»] chr3 (8 HSPs)
chr3 (237-284)||(11256560-11256607)
chr3 (137-208)||(41529842-41529913)
chr3 (237-273)||(26439351-26439387)
chr3 (237-280)||(46733052-46733095)
chr3 (137-207)||(7137494-7137564)
chr3 (238-284)||(15282667-15282713)
chr3 (218-284)||(47783094-47783160)
chr3 (238-282)||(32221500-32221544)
[»] scaffold0034 (1 HSPs)
scaffold0034 (228-284)||(94972-95028)


Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 33615069 - 33615389
Alignment:
Q  18 atcttacactagcttaacatttcattgctttgtattggacctcgttaaatttgatcctagttatctaatacttccttcggtcctttttataaacaaaaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33615069 atcttacactagcttaacatttcattgctttgtattggacctcatcaaatttgatcctagttatctaatacatccttcggtcctttttataaacaaaaaa 33615168  T
Q  118 gttaaatattttagtcgtatatactatatataaagaaaattggggatttttt-gggaatttaggactgacttttttgttattccaattatacactcttaa 216  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||    
T  33615169 gttaaatattttagtcatatatactatatataaagaaaattggggattttttggggaatttaggactgacttttttgttattccaattat--actcttaa 33615266  T
Q  217 ataaaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttatgttttggagagatttttaaaaaatagtgtccatag 316  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33615267 a-caaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttatgttttggagagatttttaaaaaatagtgtccatag 33615365  T
Q  317 cacttctcgtatcaaatatatatc 340  Q
    ||||||||||||||||||||||||    
T  33615366 cacttctcgtatcaaatatatatc 33615389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 405 - 543
Target Start/End: Original strand, 33615454 - 33615592
Alignment:
Q  405 aaacacaccctaagaggtaaacttattgtacccatgaaccaccccatgccatgctgcaagcagatttctgcattgtaacaagcatgaaactgtcaacaca 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33615454 aaacacaccctaagaggtaaacttattgtacccatgaaccaccccatgccatgctgcaagcagatttctgcattgtaacaagcatgaaactgtcaacaca 33615553  T
Q  505 ctgctatgataaaagtgtgactaacttagtgacgtgata 543  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33615554 ctgctatgataaaagtgtgactaacttagtgacgtgata 33615592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 11386321 - 11386391
Alignment:
Q  214 taaataaaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    |||| |||| ||| |||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  11386321 taaacaaaaattgatcaacaaaaattaatatatttaattcaaaatttgtatcaaatacatcaacttatgtt 11386391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 1862723 - 1862683
Alignment:
Q  244 tatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  1862723 tatttgattcaaaatttgtgtcaaatacatcaacttatgtt 1862683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 241 - 284
Target Start/End: Complemental strand, 25089986 - 25089943
Alignment:
Q  241 atatatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    ||||||||| |||||||||||||||||||||| |||||||||||    
T  25089986 atatatttgcttcaaaatttgtatcaaatacaacaacttatgtt 25089943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 276
Target Start/End: Complemental strand, 5713323 - 5713261
Alignment:
Q  214 taaataaaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaa 276  Q
    ||||||||||||||||||  || |||||  ||||| ||||||||||||||| |||||||||||    
T  5713323 taaataaaatttggtcaaccaaaattaacgtatttaattcaaaatttgtattaaatacatcaa 5713261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 219 - 284
Target Start/End: Original strand, 10459283 - 10459348
Alignment:
Q  219 aaaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    |||| |||||||| |||  ||||| |||||| |||||||||||||||| || ||||||||||||||    
T  10459283 aaaaattggtcaacaaaagttaatgtatttggttcaaaatttgtatcagatgcatcaacttatgtt 10459348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 944797 - 944853
Alignment:
Q  228 tcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    ||||||||  ||||| |||||  ||||||||||||| ||||||||||||||||||||    
T  944797 tcaataaaagttaatgtatttagttcaaaatttgtaccaaatacatcaacttatgtt 944853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 281
Target Start/End: Complemental strand, 43398912 - 43398869
Alignment:
Q  238 ttaatatatttgattcaaaatttgtatcaaatacatcaacttat 281  Q
    ||||| |||||| ||||||||||||| |||||||||||||||||    
T  43398912 ttaatgtatttggttcaaaatttgtaccaaatacatcaacttat 43398869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 218 - 284
Target Start/End: Complemental strand, 16180529 - 16180463
Alignment:
Q  218 taaaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    |||||||||||||| |||  ||||| |||||| |||||||||| |||  |||||||||| |||||||    
T  16180529 taaaatttggtcaacaaaagttaatgtatttggttcaaaatttatatttaatacatcaatttatgtt 16180463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 16564420 - 16564458
Alignment:
Q  246 tttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  16564420 tttggttcaaaatttgtaccaaatacatcaacttatgtt 16564458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 218 - 280
Target Start/End: Original strand, 19924320 - 19924382
Alignment:
Q  218 taaaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaactta 280  Q
    ||||| || |||||||||  ||||| ||| || ||||||||||||| ||||||||||||||||    
T  19924320 taaaagttagtcaataaaagttaatgtatatggttcaaaatttgtaccaaatacatcaactta 19924382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 35693935 - 35693989
Alignment:
Q  219 aaaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacat 273  Q
    |||| |||||||||||| |||||| |||||| || |||||| |||||||||||||    
T  35693935 aaaaattggtcaataaaaattaatgtatttggtttaaaattagtatcaaatacat 35693989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 38935437 - 38935391
Alignment:
Q  238 ttaatatatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    ||||| |||||  |||||||| |||||||||||||||||||||||||    
T  38935437 ttaatgtattttgttcaaaatctgtatcaaatacatcaacttatgtt 38935391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 4592464 - 4592512
Alignment:
Q  227 gtcaataaatattaatatatttgattcaaaatttgtatcaaatacatca 275  Q
    ||||| ||| |||||| |||||||||  |||||||||||||||||||||    
T  4592464 gtcaacaaaaattaatgtatttgattttaaatttgtatcaaatacatca 4592512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 244 - 284
Target Start/End: Original strand, 7932785 - 7932825
Alignment:
Q  244 tatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    |||||| |||||||||| ||||| |||||||||||||||||    
T  7932785 tatttggttcaaaatttatatcagatacatcaacttatgtt 7932825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 279
Target Start/End: Original strand, 31469088 - 31469148
Alignment:
Q  219 aaaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaactt 279  Q
    |||| |||||||| |||  ||||| |||||| || |||||||||||||||||||| |||||    
T  31469088 aaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtatcaaatacattaactt 31469148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 5056392 - 5056322
Alignment:
Q  214 taaataaaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    |||| |||| |||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||    
T  5056392 taaacaaaaattggtcaataaaaattaacgtatttgattcaaaatttgtatcaaatacatcaacttatgtt 5056322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 3694075 - 3694015
Alignment:
Q  224 ttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    |||||||| ||| |||||| ||||||||||||||||||||| ||||||||||| |||||||    
T  3694075 ttggtcaacaaaaattaatgtatttgattcaaaatttgtattaaatacatcaatttatgtt 3694015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 30693347 - 30693417
Alignment:
Q  214 taaataaaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    ||||||||| ||| |||| ||| |||||| |||||||||||||||||||| |||||||||||  |||||||    
T  30693347 taaataaaaattgatcaacaaaaattaatgtatttgattcaaaatttgtaccaaatacatcatattatgtt 30693417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 15343234 - 15343304
Alignment:
Q  214 taaataaaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    ||||||||| |||||||| |||  | |||| |||||||| |||| |||||| |||||||||||||||||||    
T  15343234 taaataaaaattggtcaacaaaagtcaataaatttgattaaaaaattgtattaaatacatcaacttatgtt 15343304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 225 - 282
Target Start/End: Complemental strand, 10498413 - 10498356
Alignment:
Q  225 tggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttatg 282  Q
    ||||||| ||| ||||||||||||  || ||||||||||||||||| |||||||||||    
T  10498413 tggtcaacaaaaattaatatatttagtttaaaatttgtatcaaatatatcaacttatg 10498356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 47543616 - 47543677
Alignment:
Q  219 aaaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaactta 280  Q
    |||| |||||||| ||| ||||||  ||||| ||||||||||||| ||||||||||||||||    
T  47543616 aaaaattggtcaacaaaaattaatgaatttggttcaaaatttgtaccaaatacatcaactta 47543677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 37918982 - 37918942
Alignment:
Q  244 tatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    |||||| || ||||||| |||||||||||||||||||||||    
T  37918982 tatttggtttaaaatttatatcaaatacatcaacttatgtt 37918942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 228 - 281
Target Start/End: Original strand, 4423175 - 4423228
Alignment:
Q  228 tcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttat 281  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  4423175 tcaataaaaattaatatatttgattcaaaatttgtaccaaatacatcaacttat 4423228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 12291514 - 12291446
Alignment:
Q  137 tatactatatataaagaaaattggggattttttgggaatttaggactgacttttttgttattccaattat 206  Q
    ||||||||||||||||||||| |||||||||    || |||||| ||||||||||||||||| |||||||    
T  12291514 tatactatatataaagaaaataggggattttggaagattttagg-ctgacttttttgttatttcaattat 12291446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 281
Target Start/End: Complemental strand, 4479670 - 4479607
Alignment:
Q  218 taaaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttat 281  Q
    ||||| ||| |||| ||| |||||||||||||||||||||||| || || |||||| |||||||    
T  4479670 taaaaattgatcaacaaaaattaatatatttgattcaaaatttataccagatacattaacttat 4479607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 5496928 - 5496882
Alignment:
Q  235 atattaatatatttgattcaaaatttgtatcaaatacatcaacttat 281  Q
    |||||||| |||||| ||||||||||||| |||||| ||||||||||    
T  5496928 atattaatgtatttggttcaaaatttgtaccaaataaatcaacttat 5496882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 12276856 - 12276902
Alignment:
Q  238 ttaatatatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    ||||| ||||||||||||||||| ||  |||||||||||||||||||    
T  12276856 ttaatgtatttgattcaaaatttatactaaatacatcaacttatgtt 12276902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 1083797 - 1083842
Alignment:
Q  239 taatatatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    |||||||||||||||||||||||||| ||||| || || |||||||    
T  1083797 taatatatttgattcaaaatttgtattaaatatataaatttatgtt 1083842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 281
Target Start/End: Original strand, 24788662 - 24788715
Alignment:
Q  228 tcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttat 281  Q
    |||| ||| |||||| ||||| |||  |||||||||||||||||||||||||||    
T  24788662 tcaacaaaaattaatgtatttaatttgaaatttgtatcaaatacatcaacttat 24788715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 281
Target Start/End: Complemental strand, 24819598 - 24819545
Alignment:
Q  228 tcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttat 281  Q
    |||| ||| |||||| ||||| |||  |||||||||||||||||||||||||||    
T  24819598 tcaacaaaaattaatgtatttaatttgaaatttgtatcaaatacatcaacttat 24819545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 55762962 - 55762905
Alignment:
Q  214 taaataaaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatac 271  Q
    |||| |||| |||||||| |||  ||||||||||||||| |||||||||| |||||||    
T  55762962 taaacaaaaattggtcaacaaaagttaatatatttgattaaaaatttgtagcaaatac 55762905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 12619657 - 12619701
Alignment:
Q  240 aatatatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  12619657 aatatatttgattcaaaatttatatcaaatacatcaacttatgtt 12619701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 284
Target Start/End: Original strand, 30293392 - 30293458
Alignment:
Q  218 taaaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    ||||||||| |||| |||  | ||| ||||||||||||||||| |||||||||||||||| ||||||    
T  30293392 taaaatttgatcaacaaaagtcaatgtatttgattcaaaatttatatcaaatacatcaacatatgtt 30293458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 33498378 - 33498444
Alignment:
Q  219 aaaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttatgttt 285  Q
    |||| |||| ||| ||| || |||||||||| |||||||||||||  ||||||||||||||||||||    
T  33498378 aaaagttggccaacaaaaatcaatatatttggttcaaaatttgtacaaaatacatcaacttatgttt 33498444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 968367 - 968314
Alignment:
Q  227 gtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaactta 280  Q
    ||||| ||| ||||||||||||  ||||||||||||| ||||||||||||||||    
T  968367 gtcaacaaaaattaatatatttagttcaaaatttgtaccaaatacatcaactta 968314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 17858198 - 17858247
Alignment:
Q  232 taaatattaatatatttgattcaaaatttgtatcaaatacatcaacttat 281  Q
    |||| |||||| |||||| |||||||||||||||| ||||||||||||||    
T  17858198 taaaaattaatgtatttggttcaaaatttgtatcagatacatcaacttat 17858247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 1592022 - 1592093
Alignment:
Q  137 tatactatatataaagaaaattggggattttttgggaatttaggactgacttttttgttattccaattatac 208  Q
    ||||||||||||||||||||| |||||||||   ||||||| |   || |||||||||||||| ||||||||    
T  1592022 tatactatatataaagaaaataggggattttagaggaattttgtgatggcttttttgttattctaattatac 1592093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 281
Target Start/End: Original strand, 5727732 - 5727794
Alignment:
Q  218 taaaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttat 281  Q
    ||||| |||||||||||| ||||||||| ||| || |||||||||| || ||||||||||||||    
T  5727732 taaaaattggtcaataaaaattaatata-ttggtttaaaatttgtaccagatacatcaacttat 5727794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 2424536 - 2424466
Alignment:
Q  214 taaataaaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    |||| |||| |||||| |||||  ||||| |||||| ||||||||||||| || |||||||| ||||||||    
T  2424536 taaacaaaaattggtcgataaaagttaatgtatttggttcaaaatttgtaccatatacatcagcttatgtt 2424466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 15119322 - 15119376
Alignment:
Q  227 gtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttat 281  Q
    |||||||||  ||||| ||||||||||||||||||||| ||||| || |||||||    
T  15119322 gtcaataaaacttaatgtatttgattcaaaatttgtattaaatatattaacttat 15119376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 225
Target Start/End: Original strand, 9050934 - 9051019
Alignment:
Q  137 tatactatatataaagaaaattggggattttttgggaatttaggactgacttttttgttattccaattatacactcttaaataaaattt 225  Q
    ||||||||||||||||||||| |||| ||||| | | |||| |  ||||||| |||||||||| ||||||  ||||||||| |||||||    
T  9050934 tatactatatataaagaaaatagggggtttttagag-attttgagctgacttatttgttattcgaattat--actcttaaacaaaattt 9051019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 11600742 - 11600696
Alignment:
Q  238 ttaatatatttgattcaaaatttgtatcaaatacatcaacttatgtttt 286  Q
    ||||||||||||||||||||||| |||  ||||| ||||||||||||||    
T  11600742 ttaatatatttgattcaaaatttatat--aatacgtcaacttatgtttt 11600696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 281
Target Start/End: Complemental strand, 28024007 - 28023954
Alignment:
Q  228 tcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttat 281  Q
    ||||||||  ||||| ||||||||||||||||||||  |||||||| |||||||    
T  28024007 tcaataaaagttaatgtatttgattcaaaatttgtacaaaatacattaacttat 28023954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 208
Target Start/End: Original strand, 42332361 - 42332390
Alignment:
Q  179 ggactgacttttttgttattccaattatac 208  Q
    ||||||||||||||||||||||||||||||    
T  42332361 ggactgacttttttgttattccaattatac 42332390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 208
Target Start/End: Complemental strand, 1584749 - 1584677
Alignment:
Q  137 tatactatatataaagaaaattggggattttttg-ggaatttaggactgacttttttgttattccaattatac 208  Q
    |||||||||||||||||| || | |||||||| | || |||| || ||| ||||||||||||| |||||||||    
T  1584749 tatactatatataaagaatatagaggatttttggagggattttgggctgtcttttttgttatttcaattatac 1584677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 11487668 - 11487628
Alignment:
Q  137 tatactatatataaagaaaattggggattttttgggaattt 177  Q
    ||||||||||||||||||||| |||||||||  ||||||||    
T  11487668 tatactatatataaagaaaataggggattttgggggaattt 11487628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 26730149 - 26730085
Alignment:
Q  217 ataaaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttat 281  Q
    |||||| ||||| || |||  ||||| ||||||||| |||||||||||||||| ||||| |||||    
T  26730149 ataaaaattggttaacaaaagttaatgtatttgattaaaaatttgtatcaaatccatcagcttat 26730085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 273
Target Start/End: Original strand, 30794457 - 30794512
Alignment:
Q  218 taaaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacat 273  Q
    |||||||||||||| |||  |||||||||||||||||||||||||| |||||||||    
T  30794457 taaaatttggtcaacaaaatttaatatatttgattcaaaatttgtaccaaatacat 30794512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 281
Target Start/End: Complemental strand, 23971278 - 23971216
Alignment:
Q  219 aaaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttat 281  Q
    |||| |||||||| ||| || |||||||||  ||||||||||||| |||||||||||||||||    
T  23971278 aaaaattggtcaacaaaaataaatatatttagttcaaaatttgtaccaaatacatcaacttat 23971216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 13640854 - 13640916
Alignment:
Q  145 atataaagaaaattggggattttttgggaatttaggactgacttttttgttattccaattata 207  Q
    ||||||||| ||| |||||| ||||| | |||| || ||||||| ||||||||||||||||||    
T  13640854 atataaagagaataggggatattttgaggattttgggctgacttctttgttattccaattata 13640916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 284
Target Start/End: Complemental strand, 18732083 - 18732018
Alignment:
Q  219 aaaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    |||| ||||||||||||  ||||| |||||| |||||||||| || || ||||||||| |||||||    
T  18732083 aaaaattggtcaataaaagttaatgtatttggttcaaaatttataccagatacatcaatttatgtt 18732018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 37698892 - 37698859
Alignment:
Q  241 atatatttgattcaaaatttgtatcaaatacatc 274  Q
    ||||||||||| ||||||||||||||||||||||    
T  37698892 atatatttgatgcaaaatttgtatcaaatacatc 37698859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 5026176 - 5026220
Alignment:
Q  238 ttaatatatttgattcaaaatttgtatcaaatacatcaacttatg 282  Q
    |||||||||||  | ||||||||||| ||||||||||||||||||    
T  5026176 ttaatatatttagtccaaaatttgtaccaaatacatcaacttatg 5026220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 244 - 284
Target Start/End: Original strand, 36035288 - 36035328
Alignment:
Q  244 tatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    ||||||||| ||||||| ||||||| |||||||||||||||    
T  36035288 tatttgatttaaaatttatatcaaaaacatcaacttatgtt 36035328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 218 - 284
Target Start/End: Original strand, 35003775 - 35003841
Alignment:
Q  218 taaaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    ||||| ||||| |||||| |||||| ||||||||||||||||||||  ||||| |||||||||||||    
T  35003775 taaaaattggttaataaaaattaatgtatttgattcaaaatttgtacaaaatatatcaacttatgtt 35003841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 218 - 273
Target Start/End: Complemental strand, 8437868 - 8437813
Alignment:
Q  218 taaaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacat 273  Q
    |||||||| ||||| ||| |||||| |||||||||||||||||||| |||||||||    
T  8437868 taaaatttagtcaacaaaaattaatgtatttgattcaaaatttgtaccaaatacat 8437813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 238 - 281
Target Start/End: Original strand, 33822324 - 33822367
Alignment:
Q  238 ttaatatatttgattcaaaatttgtatcaaatacatcaacttat 281  Q
    |||||||||||  |||||||||||||||||||||||||||||||    
T  33822324 ttaatatatttagttcaaaatttgtatcaaatacatcaacttat 33822367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 284
Target Start/End: Original strand, 2282415 - 2282480
Alignment:
Q  219 aaaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    |||| |||||||| |||  ||||| |||||  ||||||| |||||||||||||||||| |||||||    
T  2282415 aaaaattggtcaacaaaagttaatgtatttagttcaaaaattgtatcaaatacatcaatttatgtt 2282480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 284
Target Start/End: Original strand, 31323831 - 31323896
Alignment:
Q  219 aaaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    |||| |||||||| |||  ||||| |||||  ||||||||||||| || |||||||||||||||||    
T  31323831 aaaaattggtcaacaaaagttaatgtattttgttcaaaatttgtaccagatacatcaacttatgtt 31323896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 244 - 284
Target Start/End: Original strand, 30531220 - 30531260
Alignment:
Q  244 tatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    |||||| |||||| |||||| ||||||||||||||||||||    
T  30531220 tatttggttcaaagtttgtaccaaatacatcaacttatgtt 30531260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 246 - 281
Target Start/End: Complemental strand, 37627976 - 37627941
Alignment:
Q  246 tttgattcaaaatttgtatcaaatacatcaacttat 281  Q
    ||||||||||||||||||||||||||||||||||||    
T  37627976 tttgattcaaaatttgtatcaaatacatcaacttat 37627941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 9548147 - 9548077
Alignment:
Q  214 taaataaaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    |||| |||| ||| |||| ||| |||| |||||||| |||||||||||||  |||||||||||||||||||    
T  9548147 taaacaaaaattgttcaacaaaaattattatatttggttcaaaatttgtactaaatacatcaacttatgtt 9548077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 13210000 - 13210046
Alignment:
Q  238 ttaatatatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    ||||| |||||| |||||||||||||||| |||||||||||||||||    
T  13210000 ttaatgtatttggttcaaaatttgtatcagatacatcaacttatgtt 13210046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 284
Target Start/End: Complemental strand, 33557869 - 33557803
Alignment:
Q  218 taaaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    ||||| ||| ||||||||  ||||| |||||  ||||||||||||||||||||||| ||||||||||    
T  33557869 taaaaattgatcaataaaagttaatgtatttagttcaaaatttgtatcaaatacataaacttatgtt 33557803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 11196301 - 11196244
Alignment:
Q  228 tcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttatgttt 285  Q
    |||| ||| |||||| ||||| ||||||||||||||| ||||||||||||||| ||||    
T  11196301 tcaacaaaaattaatgtatttaattcaaaatttgtattaaatacatcaacttacgttt 11196244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 8777805 - 8777851
Alignment:
Q  238 ttaatatatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    |||||||||||| |||||||||| ||| |||||||| ||||||||||    
T  8777805 ttaatatatttggttcaaaatttatattaaatacattaacttatgtt 8777851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 15114634 - 15114700
Alignment:
Q  219 aaaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttatgttt 285  Q
    |||| |||||||| ||| |||||| |||||||||||||||||||   |||||| |||| ||||||||    
T  15114634 aaaaattggtcaacaaaaattaatgtatttgattcaaaatttgttctaaatacgtcaatttatgttt 15114700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 284
Target Start/End: Complemental strand, 12788308 - 12788243
Alignment:
Q  219 aaaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    ||||||| ||||||||| ||||||||||||  ||| | |||| || |||||||||||| |||||||    
T  12788308 aaaattttgtcaataaaaattaatatattttgttctatatttataacaaatacatcaatttatgtt 12788243  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 28622418 - 28622350
Alignment:
Q  140 actatatataaagaaaattggggattttttgggaatttaggactgacttttttgttattccaattatac 208  Q
    |||||||||||||||||| |||||||||  || ||||| | |||  |||||||||| |||||| |||||    
T  28622418 actatatataaagaaaataggggattttggggaaattttgaactagcttttttgtttttccaagtatac 28622350  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 237 - 284
Target Start/End: Original strand, 11256560 - 11256607
Alignment:
Q  237 attaatatatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    |||||| |||||||| ||||||||||||||||||||||||| ||||||    
T  11256560 attaatgtatttgatccaaaatttgtatcaaatacatcaacatatgtt 11256607  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 41529842 - 41529913
Alignment:
Q  137 tatactatatataaagaaaattggggattttttgggaatttaggactgacttttttgttattccaattatac 208  Q
    ||||||||||||||||||||| |||| ||||  ||  |||| || ||| |||||||||||||||||||||||    
T  41529842 tatactatatataaagaaaatagggggttttggggagattttgggctggcttttttgttattccaattatac 41529913  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 26439351 - 26439387
Alignment:
Q  237 attaatatatttgattcaaaatttgtatcaaatacat 273  Q
    |||||| ||||||||||||||||||||||||||||||    
T  26439351 attaatgtatttgattcaaaatttgtatcaaatacat 26439387  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 280
Target Start/End: Original strand, 46733052 - 46733095
Alignment:
Q  237 attaatatatttgattcaaaatttgtatcaaatacatcaactta 280  Q
    |||||| |||||||||||||||||||||||||| ||||| ||||    
T  46733052 attaatgtatttgattcaaaatttgtatcaaatgcatcagctta 46733095  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 7137564 - 7137494
Alignment:
Q  137 tatactatatataaagaaaattggggattttttgggaatttaggactgacttttttgttattccaattata 207  Q
    ||||||||||| ||||||||| ||||  |||   || |||| || ||||||||||||||||||||||||||    
T  7137564 tatactatatacaaagaaaatcgggggatttagagggattttgggctgacttttttgttattccaattata 7137494  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 15282713 - 15282667
Alignment:
Q  238 ttaatatatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    ||||| ||||||||| ||||||||||||| || ||||||||||||||    
T  15282713 ttaatgtatttgatttaaaatttgtatcagattcatcaacttatgtt 15282667  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 218 - 284
Target Start/End: Original strand, 47783094 - 47783160
Alignment:
Q  218 taaaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    ||||| |||||||| |||  ||||| |||||| |||||||||||||||| |||||||  ||||||||    
T  47783094 taaaaattggtcaaaaaaagttaatgtatttggttcaaaatttgtatcagatacatcggcttatgtt 47783160  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 32221544 - 32221500
Alignment:
Q  238 ttaatatatttgattcaaaatttgtatcaaatacatcaacttatg 282  Q
    ||||| |||||| ||||||||||||| |||||||||||| |||||    
T  32221544 ttaatgtatttggttcaaaatttgtaccaaatacatcaatttatg 32221500  T

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Target: scaffold0034 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 94972 - 95028
Alignment:
Q  228 tcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttatgtt 284  Q
    |||||||| |||||| ||||   ||||||||||||| ||||||||||||||||||||    
T  94972 tcaataaaaattaatgtattatgttcaaaatttgtaccaaatacatcaacttatgtt 95028  T

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