View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14834_low_12 (Length: 211)
Name: NF14834_low_12
Description: NF14834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14834_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 6 - 195
Target Start/End: Complemental strand, 44850159 - 44849970
Alignment:
| Q |
6 |
acatcatcatgattatcatatctagtggaatgaatgcacaccttgggtatggagagcctttgattggtttttgtccatatttcctccaagaccaaaaatc |
105 |
Q |
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| T |
44850159 |
acatcatcatgattatcatatctagtggaatgaatgcacaccttgggtatggagagcctttgattggtttttgtccatatttcctccaagaccaaaaatc |
44850060 |
T |
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| Q |
106 |
tgaaggaagtccttcattcttcaccttgctaacattctctccaatcctcacagtcacaaccgttttctcaaccattttcctgagacatgc |
195 |
Q |
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| T |
44850059 |
tgaaggaagtccttcattcttcaccttgctaacattctctccaatcctcacagtcacaaccgttttctcaaccattttcctgagacatgc |
44849970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 29998944 - 29998879
Alignment:
| Q |
45 |
accttgggtatggagagcctttgattggtttttgtccatatttcctccaagaccaaaaatctgaag |
110 |
Q |
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| T |
29998944 |
accttggatatggtgacccttttataggtttttgtccatatttcctccatgcccatatatctgaag |
29998879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 10923887 - 10923935
Alignment:
| Q |
45 |
accttgggtatggagagcctttgattggtttttgtccatatttcctcca |
93 |
Q |
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| T |
10923887 |
accttggatatggtgaccctttgattggtttttgaccatatttcctcca |
10923935 |
T |
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