View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14834_low_2 (Length: 402)
Name: NF14834_low_2
Description: NF14834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14834_low_2 |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: scaffold0224 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 27 - 386
Target Start/End: Complemental strand, 13675 - 13316
Alignment:
| Q |
27 |
tttctactcattggtttactttcatagtttaatatgcggtggaagttatcatcgattactagtttgttgtctgatgtgagcagaattggcaaaatcctaa |
126 |
Q |
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| T |
13675 |
tttctactcagtggtttactttcatagtttcatatgcggtggaagttatcatcgattactagtttgttgtctgatgtgagcagaattggcaaaatcctaa |
13576 |
T |
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| Q |
127 |
tatgatgagctaatgacnnnnnnnnnnnntcatgattttgtgcttgatttctttatagtaggtttcatgataaagagtataataaagtagtccgggttgt |
226 |
Q |
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| T |
13575 |
tatgatgagctaatgacaaaaaaaaaaaatcatgattttgtgcttgatttctttatagtaggtttcatgataaagagtgtaataaagtagtccggtctgt |
13476 |
T |
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| Q |
227 |
tggattgtagaccttgatatatttttgagggactgactcttgatattagtattaagaaaatttatcaaggttggaagtttctcaccttaagagagtcaaa |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13475 |
tggattgtagaccttgatatatttttgagggactgactcttgatattagtattaagaaaatttatcaaggttggaagtttctcaccttaagagagtcaaa |
13376 |
T |
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| Q |
327 |
gtggtgtgaaaaaataaccacttaatatgaaagtccgtagaggacgacgtactaagaatc |
386 |
Q |
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| T |
13375 |
ttggtgtgaaaagataaccacttaatatgaaagtccgtagaggacgacgtactaagaatc |
13316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 27 - 386
Target Start/End: Original strand, 42933096 - 42933455
Alignment:
| Q |
27 |
tttctactcattggtttactttcatagtttaatatgcggtggaagttatcatcgattactagtttgttgtctgatgtgagcagaattggcaaaatcctaa |
126 |
Q |
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|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42933096 |
tttctactcagtggtttactttcatagtttcatatgcggtggaagttatcatcgattactagtttgttgtctgatgtgagcagaattggcaaaatcctaa |
42933195 |
T |
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| Q |
127 |
tatgatgagctaatgacnnnnnnnnnnnntcatgattttgtgcttgatttctttatagtaggtttcatgataaagagtataataaagtagtccgggttgt |
226 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
42933196 |
tatgatgagctaatgacaaaaaaaaaaaatcatgattttgtgcttgatttctttatagtaggtttcatgataaagagtgtaataaagtagtccggtctgt |
42933295 |
T |
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| Q |
227 |
tggattgtagaccttgatatatttttgagggactgactcttgatattagtattaagaaaatttatcaaggttggaagtttctcaccttaagagagtcaaa |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42933296 |
tggattgtagaccttgatatatttttgagggactgactcttgatattagtattaagaaaatttatcaaggttggaagtttctcaccttaagagagtcaaa |
42933395 |
T |
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| Q |
327 |
gtggtgtgaaaaaataaccacttaatatgaaagtccgtagaggacgacgtactaagaatc |
386 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42933396 |
ttggtgtgaaaagataaccacttaatatgaaagtccgtagaggacgacgtactaagaatc |
42933455 |
T |
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