View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14834_low_3 (Length: 381)
Name: NF14834_low_3
Description: NF14834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14834_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 15 - 365
Target Start/End: Complemental strand, 19165545 - 19165203
Alignment:
| Q |
15 |
cagagaccgatttcagtggaacgtgttgaatgaaattgccaaattggaatggtacgtgatgggaattactcaaatgacaacctcctaaaatgctctacca |
114 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19165545 |
cagagaccgatttcagtggaacgtgtcgaatgaaattgccaaattggaatggtacgtgatgggaattactcaaatgacaacctcctaaaatgctctacca |
19165446 |
T |
|
| Q |
115 |
atatcatgatattaaactatataatatattccctcaatatagtatttggaggctcaaaaaatttaggttgtgatgatacctaagacatattgagaggtaa |
214 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19165445 |
atatcatgatattaaactatat-------tccctcaatatagtatttggaggctcaaaaaatttaggttgtgatgatacctaagacatattgagaggtaa |
19165353 |
T |
|
| Q |
215 |
aggatccaattacagtggtaagaagttgactcataatctagaaaaagtatatatttactcttgttagtattattcaccaatcggatttgcattgacgctg |
314 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19165352 |
aggatccaattacagtggtaagaagccgactcataatctag-aaaagtatatatttactcttgtaagtattattcaccaatcggatttgcattgacgctg |
19165254 |
T |
|
| Q |
315 |
ataagctcccagagttcttcaacgcaccaaaaatttatattaacaaaaaag |
365 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19165253 |
ataagcttccagagttcttcaacgcaccaaaaatttatattaataaaaaag |
19165203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 19164189 - 19164136
Alignment:
| Q |
70 |
gtgatgggaattactcaaatgacaacctcctaaaatgctctaccaatatcatga |
123 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||| || ||||||| |
|
|
| T |
19164189 |
gtgatgggaattacttaaatgacaacctcctaaaatgctatacaaacatcatga |
19164136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University