View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14834_low_9 (Length: 235)
Name: NF14834_low_9
Description: NF14834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14834_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 41736696 - 41736917
Alignment:
| Q |
1 |
caagtactaaagaaaacaagtctactagtctagtattagcacggcgcccactcaaacnnnnnnnntgtagtttaaaaactgttaacaatatactgtgtgt |
100 |
Q |
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| T |
41736696 |
caagtactaaagaaaacaagtctactagtctagtattaggacggcgcccactcaaaccaaaaaaatgtagtttaaaaactgttaacaatatactgtgagt |
41736795 |
T |
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| Q |
101 |
aatttgcagcttaaaccctctctccaaaacgtaaatataatgcaccagttcctgagttatgatcaatggcatattctgctctgaccaaaccaagcttagc |
200 |
Q |
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| T |
41736796 |
aatttgcagcttaaaacctctctccaaaacgtaaatataatgcaccagttcctgagttatgatcaatggcatattctgctctgaccaaaccaagcttagc |
41736895 |
T |
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| Q |
201 |
accaacaccataagatgaacct |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
41736896 |
accaacaccataagatgaacct |
41736917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 4601020 - 4601137
Alignment:
| Q |
105 |
tgcagcttaaaccctctctccaaaacgtaaatataatgcaccagttcctgagttatgatcaatggcatattctgctctgaccaaaccaagcttagcacca |
204 |
Q |
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||||||||||| |||||||||||| || ||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||| |
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| T |
4601020 |
tgcagcttaaaacctctctccaaatcggaaaaataaggcaccagttcctgagttatgatcaatgacatattctgctctgaccaaaccaaacttggcacca |
4601119 |
T |
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| Q |
205 |
acaccataagatgaacct |
222 |
Q |
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| T |
4601120 |
acaccataagatgaacct |
4601137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 215
Target Start/End: Original strand, 24168050 - 24168141
Alignment:
| Q |
124 |
ccaaaacgtaaatataatgcaccagttcctgagttatgatcaatggcatattctgctctgaccaaaccaagcttagcaccaacaccataaga |
215 |
Q |
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|||||||| ||| ||| |||||| ||||||||||||||||||| || ||||| ||||| || || |||||||| |||| |||||||||| |
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| T |
24168050 |
ccaaaacggaaaaatattgcacctgttcctgagttatgatcaaccgcgtattccgctctcactaacccaagcttcataccagcaccataaga |
24168141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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