View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14835_high_1 (Length: 559)
Name: NF14835_high_1
Description: NF14835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14835_high_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 10 - 559
Target Start/End: Complemental strand, 44041889 - 44041338
Alignment:
| Q |
10 |
gacatcatcatcactagaatctaagcccaaatcagatatctgacctgagcaatattccatattgcaagagataaagaggcagtggctaggaagagacccc |
109 |
Q |
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| T |
44041889 |
gacatcatcatcactagaatctaagcccaaatcagatatctcacctgagcaatattccatattgcaagagataaagaggcagtggctaggaagagacccc |
44041790 |
T |
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| Q |
110 |
caatgacccagttactggtttctgctaatagagaccagaatggttgcgatgtagagggttgagtttgaatgctactaatgggagcacccttgtaaaaggt |
209 |
Q |
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| T |
44041789 |
caatgacccagttactggtttctgctaatagagaccagaatggttgcgatgtagagggttgagtttgaatgctactaatgggagcacccttgtaaaaggt |
44041690 |
T |
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| Q |
210 |
cactattaaagctcctgagatagacaccacagtccccacaattttgatctggcttattgagcttccagcatccaacttctccatcctacaatggtttttg |
309 |
Q |
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| T |
44041689 |
cactattaaagctcctgagatagacaccacagtccccacaattttgatctggcttattgagcttccagcatccaacttctccatcctacaacggtttttg |
44041590 |
T |
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| Q |
310 |
aaatagtaaaataatccaactgttatgcataattataagtttgcataagaacctctaaacatggttgtttatttatattttagtactatcaacacattat |
409 |
Q |
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| T |
44041589 |
aaatagtaaaataatccaactgttatgcataattataagtttgcataagaacctctaaacatggttgtttatttatattttagtactatcaacacattat |
44041490 |
T |
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| Q |
410 |
ctaacac--attttccaacacacctatttacctgaagatgactgctagaacaaaagtgatcgccggagtcaagttgctcatagcagatccaagggtggga |
507 |
Q |
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| T |
44041489 |
ctaacacatattttccaacacacctatttacctgaagatgactgctagaacaaaagtgatcgccggagtcaagttgctcatagcagatccaagggtggga |
44041390 |
T |
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| Q |
508 |
gagctgtagcttatgccagtgaatacacaattctgcatgatagttatgctgc |
559 |
Q |
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| T |
44041389 |
gagctgtagcttatgccagtgaatacacaattctgcatgatagttatgctgc |
44041338 |
T |
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